Variant report

Variant	rs13063185
Chromosome Location	chr3:23265345-23265346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs12106681	0.81[EUR][1000 genomes]
rs13060112	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13060251	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13063986	1.00[YRI][hapmap]
rs13066741	0.90[CEU][hapmap];1.00[YRI][hapmap]
rs13067514	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13073761	0.83[AMR][1000 genomes]
rs13076527	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes]
rs13078970	0.81[EUR][1000 genomes]
rs13083654	1.00[YRI][hapmap]
rs13084250	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13084327	1.00[YRI][hapmap]
rs13085266	0.89[AMR][1000 genomes]
rs13087234	1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs13087238	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs13087563	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13090303	1.00[YRI][hapmap]
rs13090335	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13090633	0.89[AMR][1000 genomes]
rs13092830	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs13095736	1.00[YRI][hapmap]
rs13096187	1.00[CEU][hapmap]
rs13098494	1.00[YRI][hapmap]
rs13099586	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13100605	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17012897	0.81[EUR][1000 genomes]
rs17345745	1.00[YRI][hapmap]
rs34443476	0.83[AMR][1000 genomes]
rs34474308	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34513914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34584255	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34619482	0.83[AMR][1000 genomes]
rs34732257	0.89[AMR][1000 genomes]
rs34743949	0.89[AMR][1000 genomes]
rs35096750	0.81[EUR][1000 genomes]
rs35190363	0.89[AMR][1000 genomes]
rs35230557	0.94[AMR][1000 genomes]
rs35240920	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35346188	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35402533	0.84[AMR][1000 genomes]
rs35587590	0.81[EUR][1000 genomes]
rs35657558	0.83[AMR][1000 genomes]
rs35776486	0.81[EUR][1000 genomes]
rs35892300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35902312	0.83[AMR][1000 genomes]
rs35928592	0.94[AMR][1000 genomes]
rs36060079	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36123979	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71317817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71317819	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71317820	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71317821	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71317822	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71317823	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71317824	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71317827	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71317829	0.81[EUR][1000 genomes]
rs71317834	0.89[AMR][1000 genomes]
rs71322171	0.89[AMR][1000 genomes]
rs71322172	0.83[AMR][1000 genomes]
rs71322173	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23246400-23273400	Weak transcription	Aorta	Aorta
2	chr3:23248800-23265800	Weak transcription	Primary T cells from cord blood	blood
3	chr3:23249000-23273400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:23260800-23270400	Weak transcription	Psoas Muscle	Psoas
5	chr3:23260800-23273400	Weak transcription	Right Atrium	heart
6	chr3:23261000-23273400	Weak transcription	Ovary	ovary
7	chr3:23261000-23274400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:23261200-23272600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:23261400-23278200	Weak transcription	Brain Angular Gyrus	brain
10	chr3:23262600-23268000	Weak transcription	Thymus	Thymus
11	chr3:23264400-23265400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:23264400-23269400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr3:23264800-23265600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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