Variant report

Variant	rs13064466
Chromosome Location	chr3:113762574-113762575
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113758856..113764002-chr3:113773608..113777003,6	MCF-7	breast:
2	chr3:113761888..113764826-chr3:113769593..113771190,2	K562	blood:

Variant related genes	Relation type
ENSG00000163617	Chromatin interaction
ENSG00000151576	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11926807	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13061658	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13064372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13069900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13070378	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13071100	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13086657	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13087347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13096290	0.96[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1386478	0.91[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs1487265	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2029228	0.83[YRI][hapmap]
rs2134655	1.00[YRI][hapmap]
rs2242316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2632241	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2632259	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs324024	1.00[YRI][hapmap]
rs324553	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs324555	0.91[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs324556	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35745351	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7620955	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7631864	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877352	chr3:113744010-113870078	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113715000-113762600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:113724800-113763400	Weak transcription	Fetal Lung	lung
3	chr3:113724800-113774400	Weak transcription	Aorta	Aorta
4	chr3:113725200-113767000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:113725200-113774200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:113725200-113774600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr3:113725200-113774800	Weak transcription	Pancreas	Pancrea
8	chr3:113725400-113774400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr3:113744400-113774200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:113745800-113764600	Weak transcription	A549	lung
11	chr3:113745800-113774200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:113747800-113762600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:113751000-113774200	Weak transcription	Fetal Intestine Small	intestine
14	chr3:113752800-113762800	Weak transcription	Fetal Brain Male	brain
15	chr3:113753600-113763000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr3:113753800-113763600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:113753800-113764000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr3:113754000-113762800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:113754000-113763400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:113754000-113763600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr3:113754000-113774000	Weak transcription	Primary T cells from cord blood	blood
22	chr3:113754000-113774200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr3:113754000-113774200	Weak transcription	Stomach Mucosa	stomach
24	chr3:113754000-113774800	Weak transcription	Ovary	ovary
25	chr3:113754200-113774800	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr3:113754800-113774400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr3:113755600-113763400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:113755600-113770800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:113755600-113771200	Weak transcription	Primary B cells from cord blood	blood
30	chr3:113755800-113774200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:113757400-113774200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr3:113759200-113764000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr3:113759200-113774800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr3:113759800-113762600	Weak transcription	Fetal Kidney	kidney
35	chr3:113760400-113774000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr3:113760600-113763800	Weak transcription	Adipose Nuclei	Adipose
37	chr3:113760600-113774800	Weak transcription	Left Ventricle	heart
38	chr3:113761200-113767200	Weak transcription	Gastric	stomach

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