Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1483855	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs167734	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs188923	0.95[ASN][1000 genomes]
rs2060565	0.86[ASN][1000 genomes]
rs2082932	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2885835	0.87[ASN][1000 genomes]
rs321542	0.81[CHB][hapmap]
rs322711	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs322713	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs322714	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs322715	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55793955	0.90[ASN][1000 genomes]
rs60540126	0.90[ASN][1000 genomes]
rs61691090	0.90[ASN][1000 genomes]
rs6550958	0.87[ASN][1000 genomes]
rs6778300	0.86[ASN][1000 genomes]
rs6781087	0.84[ASN][1000 genomes]
rs6798155	0.87[ASN][1000 genomes]
rs73821765	0.88[ASN][1000 genomes]
rs7635517	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9829952	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9830578	0.81[ASN][1000 genomes]
rs9868267	0.81[ASN][1000 genomes]
rs9876917	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv508213	chr3:25206150-25326196	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1006455	chr3:25277328-25327235	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876632	chr3:25325479-25366205	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25323400-25333600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:25324800-25329800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:25325600-25326400	Enhancers	Aorta	Aorta
4	chr3:25325600-25329200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search: