Variant report

Variant	rs13073613
Chromosome Location	chr3:81888512-81888513
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:81888216-81888750	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000242009	TF binding region

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11127740	0.91[CEU][hapmap];0.88[YRI][hapmap]
rs11127742	0.82[EUR][1000 genomes]
rs11707026	0.87[CEU][hapmap];0.95[GIH][hapmap]
rs11711024	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11711331	0.86[GIH][hapmap];0.82[TSI][hapmap]
rs11712243	0.84[EUR][1000 genomes]
rs11715625	0.86[EUR][1000 genomes]
rs12152272	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13062741	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13065281	0.87[CEU][hapmap]
rs13072957	0.91[CEU][hapmap];1.00[GIH][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap]
rs13074632	0.81[EUR][1000 genomes]
rs13075250	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13079104	0.83[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13080520	0.91[CEU][hapmap];0.95[GIH][hapmap];0.84[EUR][1000 genomes]
rs13083476	0.84[EUR][1000 genomes]
rs13091492	0.84[EUR][1000 genomes]
rs13092157	0.93[EUR][1000 genomes]
rs13099615	0.91[CEU][hapmap]
rs1464790	0.96[CEU][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs1464791	0.89[EUR][1000 genomes]
rs1524557	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17019299	0.89[EUR][1000 genomes]
rs1851930	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2053805	0.91[CEU][hapmap];0.97[GIH][hapmap];0.85[TSI][hapmap]
rs2229519	0.87[CEU][hapmap];0.95[GIH][hapmap]
rs2691093	0.82[CHD][hapmap]
rs2873054	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3755713	0.91[CEU][hapmap];0.97[GIH][hapmap];0.85[MKK][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs3772882	0.82[GIH][hapmap]
rs3772883	0.82[GIH][hapmap]
rs3772884	0.91[CEU][hapmap];0.90[MKK][hapmap];0.85[TSI][hapmap]
rs3821548	0.86[GIH][hapmap];0.82[TSI][hapmap]
rs3821551	0.91[CEU][hapmap]
rs3821552	0.87[CEU][hapmap]
rs3849570	0.86[GIH][hapmap];0.82[TSI][hapmap]
rs3943556	0.91[CEU][hapmap]
rs4411908	0.82[GIH][hapmap]
rs6765917	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6792696	0.87[EUR][1000 genomes]
rs6795133	0.91[CEU][hapmap];1.00[GIH][hapmap];0.81[MKK][hapmap];0.84[TSI][hapmap]
rs6804587	0.87[EUR][1000 genomes]
rs6809528	0.80[EUR][1000 genomes]
rs7620240	0.84[GIH][hapmap];0.82[TSI][hapmap]
rs7631052	0.91[EUR][1000 genomes]
rs7634258	0.91[CEU][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap]
rs7641973	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7648245	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9841087	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81885200-81889000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:81885400-81889600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:81886600-81889400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:81886600-81891600	Enhancers	Dnd41	blood
5	chr3:81887400-81888800	Enhancers	GM12878-XiMat	blood
6	chr3:81887600-81889400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:81887800-81888800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:81887800-81889400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:81888000-81888800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:81888000-81889400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr3:81888200-81888600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:81888200-81889400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr3:81888400-81888800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:81888400-81889200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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