Variant report

Variant	rs13073976
Chromosome Location	chr3:46286663-46286664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 152 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs10510750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11574442	1.00[AFR][1000 genomes]
rs11575062	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11919884	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11919943	0.87[CEU][hapmap]
rs11926063	1.00[CEU][hapmap]
rs13060713	0.81[EUR][1000 genomes]
rs13065351	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13067058	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MKK][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13068145	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13068271	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13070099	1.00[CEU][hapmap]
rs13071469	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13075270	1.00[CEU][hapmap]
rs13075836	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs13077302	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13078564	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13080757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13088766	1.00[CEU][hapmap]
rs13092160	1.00[CEU][hapmap]
rs13093063	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13095946	1.00[CEU][hapmap]
rs13096307	1.00[CEU][hapmap]
rs13096325	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs13096371	1.00[CEU][hapmap]
rs13096808	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13096905	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13097340	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs13100243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes]
rs1542755	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MKK][hapmap]
rs1542756	0.81[EUR][1000 genomes]
rs17217831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17283712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17284138	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17284187	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17285143	1.00[AFR][1000 genomes]
rs17715106	1.00[AFR][1000 genomes]
rs17765882	1.00[AFR][1000 genomes]
rs17782551	1.00[AFR][1000 genomes]
rs1894387	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1894388	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2131092	0.81[EUR][1000 genomes]
rs2157053	1.00[AFR][1000 genomes]
rs2157055	1.00[AFR][1000 genomes]
rs2373156	1.00[CEU][hapmap]
rs2373245	1.00[AFR][1000 genomes]
rs2373250	1.00[AFR][1000 genomes]
rs2373251	1.00[AFR][1000 genomes]
rs2856762	0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes]
rs28677778	0.88[EUR][1000 genomes]
rs3091310	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3091314	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs3092957	0.85[EUR][1000 genomes]
rs3092958	0.85[EUR][1000 genomes]
rs3092959	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3136667	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs3176825	1.00[CEU][hapmap]
rs3176826	1.00[CEU][hapmap]
rs3181038	1.00[AFR][1000 genomes]
rs3181076	1.00[CEU][hapmap]
rs3181080	1.00[CEU][hapmap]
rs3204850	1.00[AFR][1000 genomes]
rs33998492	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34005848	0.81[EUR][1000 genomes]
rs34024447	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34041956	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34073838	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34079287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34106161	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34180919	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34190223	1.00[AFR][1000 genomes]
rs34194160	0.81[EUR][1000 genomes]
rs34265215	1.00[AFR][1000 genomes]
rs34272024	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34289272	0.81[EUR][1000 genomes]
rs34351442	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34363105	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34406035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34414382	0.81[EUR][1000 genomes]
rs34448949	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34455547	1.00[AFR][1000 genomes]
rs34473395	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34578126	0.86[EUR][1000 genomes]
rs34677490	0.81[EUR][1000 genomes]
rs34692251	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34709208	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34745455	0.81[EUR][1000 genomes]
rs34883716	1.00[AFR][1000 genomes]
rs34988015	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34997818	1.00[AFR][1000 genomes]
rs35035328	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35117954	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35148665	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35203745	0.88[EUR][1000 genomes]
rs35218998	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35260614	1.00[AFR][1000 genomes]
rs35367413	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35373513	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35413141	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35438577	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35511592	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35513549	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs35516519	1.00[AFR][1000 genomes]
rs35568430	1.00[AFR][1000 genomes]
rs35577626	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35601704	0.85[EUR][1000 genomes]
rs35613615	0.81[EUR][1000 genomes]
rs35646896	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35821444	1.00[AFR][1000 genomes]
rs35943069	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs36030692	1.00[AFR][1000 genomes]
rs36048333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36052732	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs36078103	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3749461	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3918354	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3918362	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3918365	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3918368	0.85[EUR][1000 genomes]
rs4473594	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4987053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6775046	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs6793370	0.88[EUR][1000 genomes]
rs71327041	0.81[EUR][1000 genomes]
rs71327042	0.81[EUR][1000 genomes]
rs71327047	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71327048	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs71327052	0.82[EUR][1000 genomes]
rs71327053	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs71327054	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs71327055	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs71327056	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs71327057	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs71327063	1.00[AFR][1000 genomes]
rs71615441	0.81[EUR][1000 genomes]
rs71615445	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs71622511	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7620586	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs7624155	1.00[CEU][hapmap]
rs7628489	1.00[CEU][hapmap]
rs7631551	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs7649905	0.88[EUR][1000 genomes]
rs7651539	1.00[CEU][hapmap]
rs916092	0.82[CHB][hapmap]
rs9714000	1.00[AFR][1000 genomes]
rs9810242	0.88[EUR][1000 genomes]
rs9832730	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9838191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9872023	0.90[EUR][1000 genomes]
rs9882616	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13073976	CCR1	cis	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46281600-46288600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr3:46286200-46286800	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr3:46286400-46287000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:46286600-46286800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:46286600-46286800	Enhancers	Adipose Nuclei	Adipose

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