Variant report

Variant	rs13074020
Chromosome Location	chr3:145066933-145066934
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10935552	0.80[ASN][1000 genomes]
rs1115368	0.87[ASN][1000 genomes]
rs11922880	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11924944	0.87[ASN][1000 genomes]
rs11927228	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs13060269	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1320914	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1373859	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1374923	0.92[ASN][1000 genomes]
rs1383609	0.87[ASN][1000 genomes]
rs1383610	0.87[ASN][1000 genomes]
rs1481073	0.87[ASN][1000 genomes]
rs1481075	0.87[ASN][1000 genomes]
rs1481076	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1481077	0.92[ASN][1000 genomes]
rs1516545	0.81[ASN][1000 genomes]
rs1822912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1823240	0.92[ASN][1000 genomes]
rs1829147	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1842547	0.85[ASN][1000 genomes]
rs1850292	0.91[ASN][1000 genomes]
rs2029017	0.87[ASN][1000 genomes]
rs2029018	0.87[ASN][1000 genomes]
rs2121846	0.87[ASN][1000 genomes]
rs2121847	0.87[ASN][1000 genomes]
rs2166817	0.87[ASN][1000 genomes]
rs2699913	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs34981525	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35407657	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3845963	0.80[ASN][1000 genomes]
rs3845964	0.83[ASN][1000 genomes]
rs4681092	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4681094	0.92[ASN][1000 genomes]
rs4681095	0.92[ASN][1000 genomes]
rs4681233	0.92[ASN][1000 genomes]
rs5021785	0.82[ASN][1000 genomes]
rs55886851	0.86[ASN][1000 genomes]
rs56053930	0.86[ASN][1000 genomes]
rs56161383	0.87[ASN][1000 genomes]
rs56196594	0.87[ASN][1000 genomes]
rs56310989	0.87[ASN][1000 genomes]
rs62270066	0.87[ASN][1000 genomes]
rs62271630	0.85[ASN][1000 genomes]
rs6440351	0.87[ASN][1000 genomes]
rs6769417	0.81[ASN][1000 genomes]
rs6770882	0.87[ASN][1000 genomes]
rs6779481	0.87[ASN][1000 genomes]
rs6786883	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6803923	0.87[ASN][1000 genomes]
rs6806537	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6810154	0.86[ASN][1000 genomes]
rs73157233	0.81[ASN][1000 genomes]
rs7618012	0.87[ASN][1000 genomes]
rs7618203	0.87[ASN][1000 genomes]
rs7622361	0.82[ASN][1000 genomes]
rs7629981	0.87[ASN][1000 genomes]
rs7632440	0.82[ASN][1000 genomes]
rs7632641	0.82[ASN][1000 genomes]
rs7651246	0.87[ASN][1000 genomes]
rs961929	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004792	chr3:144658885-145191801	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv877581	chr3:144815506-145181910	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv998288	chr3:144815560-145147528	Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv877584	chr3:144903957-145833232	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv998876	chr3:144946062-145228614	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv877587	chr3:144949453-145355433	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv877593	chr3:144968890-145092747	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv460877	chr3:144968890-145174583	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv591932	chr3:144968890-145174583	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1001500	chr3:144992948-145211714	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv470927	chr3:144994727-145151554	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv1003916	chr3:144996733-145146269	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv1001371	chr3:145028362-145124968	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv877597	chr3:145066128-145147420	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv877598	chr3:145066128-145215363	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv877599	chr3:145066128-145225110	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145054800-145070200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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