Variant report
| Variant | rs13075250 |
|---|---|
| Chromosome Location | chr3:81907952-81907953 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11711024 | 0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11712243 | 0.80[EUR][1000 genomes] |
| rs11715625 | 0.82[EUR][1000 genomes] |
| rs12152272 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13062741 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13073613 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs13079104 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13080520 | 0.80[EUR][1000 genomes] |
| rs13083476 | 0.80[EUR][1000 genomes] |
| rs13091492 | 0.81[EUR][1000 genomes] |
| rs13092157 | 0.89[EUR][1000 genomes] |
| rs1464790 | 0.88[EUR][1000 genomes] |
| rs1464791 | 0.88[EUR][1000 genomes] |
| rs1524557 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17019299 | 0.85[EUR][1000 genomes] |
| rs1851930 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2873054 | 0.86[EUR][1000 genomes] |
| rs6765917 | 0.86[EUR][1000 genomes] |
| rs6792696 | 0.83[EUR][1000 genomes] |
| rs6804587 | 0.83[EUR][1000 genomes] |
| rs7631052 | 0.87[EUR][1000 genomes] |
| rs7641973 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7648245 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9841087 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999992 | chr3:81693662-82015969 | Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv536605 | chr3:81693662-82015969 | Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 3 | esv2453055 | chr3:81906123-81907991 | Weak transcription Enhancers | lncRNA | 2 gene(s) | inside rSNPs | n/a |
| 4 | esv3434713 | chr3:81906712-81908810 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| 5 | esv6487 | chr3:81907260-81908057 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | n/a |
| 6 | esv2022920 | chr3:81907326-81907992 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| 7 | esv2018755 | chr3:81907456-81908016 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:81907200-81910000 | Weak transcription | Fetal Heart | heart |
