Variant report

Variant	rs13080520
Chromosome Location	chr3:81850742-81850743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:81807852..81811889-chr3:81850575..81853159,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114480	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11127740	0.91[CEU][hapmap]
rs11707026	0.81[ASW][hapmap];0.87[CEU][hapmap];0.91[GIH][hapmap]
rs11711024	0.83[EUR][1000 genomes]
rs11711331	0.82[GIH][hapmap]
rs12152272	0.83[EUR][1000 genomes]
rs13062741	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs13065281	0.87[CEU][hapmap]
rs13072957	0.91[CEU][hapmap];0.95[GIH][hapmap]
rs13073613	0.91[CEU][hapmap];0.95[GIH][hapmap];0.84[EUR][1000 genomes]
rs13075250	0.80[EUR][1000 genomes]
rs13079104	0.96[CEU][hapmap];0.95[GIH][hapmap];0.84[EUR][1000 genomes]
rs13092157	0.84[EUR][1000 genomes]
rs13099615	0.91[CEU][hapmap]
rs1464790	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs1524557	0.83[EUR][1000 genomes]
rs17019299	0.86[EUR][1000 genomes]
rs2053805	0.91[CEU][hapmap];0.93[GIH][hapmap]
rs2229519	0.81[ASW][hapmap];0.87[CEU][hapmap];0.90[GIH][hapmap]
rs3755713	0.91[CEU][hapmap];0.93[GIH][hapmap]
rs3772882	0.87[GIH][hapmap];0.89[TSI][hapmap]
rs3772883	0.87[GIH][hapmap];0.89[TSI][hapmap]
rs3772884	0.91[CEU][hapmap]
rs3772912	0.83[TSI][hapmap]
rs3821548	0.82[GIH][hapmap]
rs3821551	0.91[CEU][hapmap]
rs3821552	0.87[CEU][hapmap]
rs3849570	0.82[GIH][hapmap]
rs3860595	0.83[GIH][hapmap];0.89[TSI][hapmap]
rs3943556	0.91[CEU][hapmap]
rs4411908	0.87[GIH][hapmap];0.89[TSI][hapmap]
rs6795133	0.91[CEU][hapmap];0.95[GIH][hapmap]
rs6809528	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7631052	0.86[EUR][1000 genomes]
rs7634258	0.91[CEU][hapmap];0.95[GIH][hapmap]
rs7642112	0.87[CEU][hapmap]
rs7648245	0.83[EUR][1000 genomes]
rs9818006	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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