Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11711662	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs1375521	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap]
rs1375522	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs1449333	0.83[CEU][hapmap]
rs1473348	0.87[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs1992963	0.82[CEU][hapmap]
rs1992964	0.82[CEU][hapmap]
rs2359786	0.81[JPT][hapmap]
rs4131315	0.83[YRI][hapmap]
rs6445653	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs6445655	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs6769553	0.96[CEU][hapmap]
rs6804196	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs731508	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs7374435	0.91[JPT][hapmap]
rs7426795	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]
rs7429237	0.82[CEU][hapmap]
rs7645545	0.83[JPT][hapmap];0.82[YRI][hapmap]
rs7653648	0.87[CEU][hapmap];0.86[JPT][hapmap]
rs9817603	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.80[YRI][hapmap]
rs9826277	0.80[CEU][hapmap]
rs9843412	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs9864105	0.82[JPT][hapmap]
rs9882299	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv817210	chr3:54365684-54511164	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv428084	chr3:54404258-54742756	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1010348	chr3:54435563-54508115	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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