Variant report

Variant	rs13090721
Chromosome Location	chr3:119741778-119741779
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119736409..119738702-chr3:119741738..119744184,2	MCF-7	breast:
2	chr3:119741634..119743894-chr3:119814255..119816280,3	K562	blood:

Variant related genes	Relation type
ENSG00000242622	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9864678	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119712600-119745000	Weak transcription	Hela-S3	cervix
2	chr3:119713200-119744400	Weak transcription	Fetal Kidney	kidney
3	chr3:119730000-119743000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr3:119730000-119743000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:119731400-119752400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:119732200-119747200	Weak transcription	Gastric	stomach
7	chr3:119732200-119747600	Weak transcription	Right Ventricle	heart
8	chr3:119732600-119748400	Weak transcription	Brain Angular Gyrus	brain
9	chr3:119732600-119748600	Weak transcription	HSMM	muscle
10	chr3:119732600-119757800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:119732800-119746200	Weak transcription	Fetal Lung	lung
12	chr3:119732800-119749200	Weak transcription	Fetal Stomach	stomach
13	chr3:119733000-119747400	Weak transcription	Right Atrium	heart
14	chr3:119733200-119744200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr3:119734800-119750000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:119735000-119751600	Weak transcription	Primary B cells from cord blood	blood
17	chr3:119735200-119742800	Weak transcription	Fetal Brain Female	brain
18	chr3:119735800-119744400	Weak transcription	HMEC	breast
19	chr3:119736000-119746400	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr3:119736600-119744000	Weak transcription	Fetal Intestine Small	intestine
21	chr3:119737000-119749400	Weak transcription	Stomach Mucosa	stomach
22	chr3:119737000-119751800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr3:119737400-119744600	Weak transcription	HepG2	liver
24	chr3:119737400-119751800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr3:119737400-119754000	Weak transcription	Small Intestine	intestine
26	chr3:119737600-119743000	Weak transcription	Spleen	Spleen
27	chr3:119737800-119757200	Weak transcription	A549	lung
28	chr3:119738400-119744800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr3:119738400-119747000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr3:119738600-119743600	Weak transcription	Fetal Intestine Large	intestine
31	chr3:119738600-119747000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr3:119738800-119746400	Weak transcription	Fetal Heart	heart
33	chr3:119739000-119742000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:119739200-119742600	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr3:119739200-119744000	Weak transcription	Fetal Thymus	thymus
36	chr3:119739400-119756000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr3:119739600-119743000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr3:119739600-119749400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr3:119739800-119742200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr3:119740000-119743600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr3:119740000-119744000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr3:119740000-119744600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr3:119740000-119745000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:119740000-119747000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr3:119740000-119747200	Weak transcription	Colon Smooth Muscle	Colon
46	chr3:119740000-119747400	Weak transcription	Lung	lung
47	chr3:119740000-119747400	Weak transcription	Ovary	ovary
48	chr3:119740000-119747600	Weak transcription	Pancreas	Pancrea
49	chr3:119740000-119758200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr3:119740200-119742000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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