Variant report

Variant	rs13093968
Chromosome Location	chr3:42883465-42883466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42883358..42885029-chr3:42888181..42889753,2	K562	blood:
2	chr3:42881286..42884459-chr3:42886428..42891439,4	K562	blood:

rs_ID	r²[population]
rs11715464	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12494055	0.90[GIH][hapmap];0.92[JPT][hapmap]
rs17455509	1.00[LWK][hapmap]
rs3732860	0.82[CHD][hapmap];0.90[GIH][hapmap];0.92[JPT][hapmap]
rs6788947	0.92[JPT][hapmap]

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42861600-42885400	Weak transcription	Pancreas	Pancrea
2	chr3:42871200-42885000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:42871400-42885400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:42873200-42885400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:42878400-42887600	Weak transcription	Fetal Heart	heart
6	chr3:42881000-42887400	Weak transcription	Ovary	ovary
7	chr3:42881200-42884800	Weak transcription	Aorta	Aorta
8	chr3:42881200-42884800	Weak transcription	HSMMtube	muscle
9	chr3:42881200-42887600	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:42881200-42887600	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:42881200-42887600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:42881200-42887600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr3:42881400-42884800	Weak transcription	Adipose Nuclei	Adipose
14	chr3:42881400-42885200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:42881400-42887600	Weak transcription	Fetal Kidney	kidney
16	chr3:42881800-42883600	Enhancers	Liver	Liver
17	chr3:42882000-42885000	Weak transcription	K562	blood
18	chr3:42882000-42886000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr3:42883000-42883600	Enhancers	Right Atrium	heart
20	chr3:42883000-42883600	Enhancers	Stomach Smooth Muscle	stomach
21	chr3:42883200-42883600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:42883400-42883600	Genic enhancers	Placenta	Placenta
23	chr3:42883400-42883800	Enhancers	Spleen	Spleen
24	chr3:42883400-42885000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:42883400-42885000	Weak transcription	Fetal Muscle Leg	muscle
26	chr3:42883400-42885000	Weak transcription	HepG2	liver

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