Variant report

Variant	rs13096290
Chromosome Location	chr3:113690427-113690428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11926807	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13061658	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13064372	0.95[CEU][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13064466	0.96[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13069900	0.96[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13070378	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13071100	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs13086657	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs13087347	0.96[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]
rs1386478	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.84[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1487265	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2029228	0.82[YRI][hapmap]
rs2134655	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs2242316	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2632241	1.00[CEU][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2632259	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs324024	1.00[YRI][hapmap]
rs324553	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs324555	0.96[CEU][hapmap];0.97[GIH][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs324556	0.92[CEU][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap]
rs35745351	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7631864	0.96[CEU][hapmap];0.83[GIH][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13096290	KIAA1407	cis	lymphoblastoid	seeQTL

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113667600-113695800	Weak transcription	Left Ventricle	heart
2	chr3:113667800-113696800	Weak transcription	Right Ventricle	heart
3	chr3:113667800-113710800	Weak transcription	Esophagus	oesophagus
4	chr3:113668000-113692000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:113668000-113699000	Weak transcription	Stomach Mucosa	stomach
6	chr3:113668200-113696200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:113668400-113724200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:113672400-113698000	Weak transcription	Ovary	ovary
9	chr3:113673000-113700800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr3:113673400-113696400	Weak transcription	Brain Angular Gyrus	brain
11	chr3:113673400-113704400	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:113673400-113761000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:113674000-113743800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:113676400-113723400	Weak transcription	Brain Substantia Nigra	brain
15	chr3:113678000-113693200	Weak transcription	Fetal Intestine Small	intestine
16	chr3:113678000-113693200	Weak transcription	Fetal Stomach	stomach
17	chr3:113678000-113724400	Weak transcription	Pancreas	Pancrea
18	chr3:113678000-113731400	Weak transcription	Gastric	stomach
19	chr3:113679600-113695800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr3:113680000-113691200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr3:113680200-113693200	Weak transcription	Aorta	Aorta
22	chr3:113681400-113693200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr3:113682200-113691200	Weak transcription	Primary B cells from peripheral blood	blood
24	chr3:113682800-113707200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:113683000-113723600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr3:113685400-113691400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr3:113685400-113696800	Weak transcription	Lung	lung
28	chr3:113688200-113696400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr3:113688200-113697600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:113688600-113699400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr3:113689000-113691800	Weak transcription	Liver	Liver
32	chr3:113690200-113690600	ZNF genes & repeats	Primary B cells from cord blood	blood
33	chr3:113690200-113690800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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