Variant report

Variant	rs13103261
Chromosome Location	chr4:143772105-143772106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr4:143771581-143772108	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:143771733..143772322-chr4:143906005..143906508,2	MCF-7	breast:
2	chr4:143767768..143770227-chr4:143771801..143773532,2	MCF-7	breast:
3	chr4:143766308..143769108-chr4:143769485..143773998,4	MCF-7	breast:

Variant related genes	Relation type
INPP4B	TF binding region
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10023146	0.93[ASN][1000 genomes]
rs10029622	0.87[EUR][1000 genomes]
rs10034956	0.93[ASN][1000 genomes]
rs10049507	0.93[ASN][1000 genomes]
rs11100756	0.93[ASN][1000 genomes]
rs11725795	0.93[ASN][1000 genomes]
rs13105531	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13108947	0.80[ASN][1000 genomes]
rs13112871	0.93[ASN][1000 genomes]
rs13116732	0.93[ASN][1000 genomes]
rs13132001	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13133396	0.93[ASN][1000 genomes]
rs13135210	0.80[ASN][1000 genomes]
rs13140998	0.80[ASN][1000 genomes]
rs1373664	0.93[ASN][1000 genomes]
rs1441412	1.00[ASN][1000 genomes]
rs1441416	0.93[ASN][1000 genomes]
rs1899564	0.93[ASN][1000 genomes]
rs2322814	0.93[ASN][1000 genomes]
rs28367408	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410519	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28421948	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28453834	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28462985	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28508323	0.93[ASN][1000 genomes]
rs28533753	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28608029	0.93[ASN][1000 genomes]
rs28665985	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28667040	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28685292	0.93[ASN][1000 genomes]
rs28715653	0.87[EUR][1000 genomes]
rs34032529	0.93[ASN][1000 genomes]
rs34241470	0.93[ASN][1000 genomes]
rs34412123	0.93[ASN][1000 genomes]
rs34804364	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35053070	0.80[ASN][1000 genomes]
rs35416729	0.93[ASN][1000 genomes]
rs35838997	0.93[ASN][1000 genomes]
rs35918867	0.93[ASN][1000 genomes]
rs36042265	0.93[ASN][1000 genomes]
rs62331921	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62331922	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62331933	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62331934	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662067	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7683763	0.87[EUR][1000 genomes]
rs986081	0.93[ASN][1000 genomes]
rs9994268	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143768600-143772400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143768600-143781200	Weak transcription	Psoas Muscle	Psoas
3	chr4:143771800-143772200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:143771800-143772200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr4:143772000-143772200	Enhancers	H1 Cell Line	embryonic stem cell

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