Variant report

Variant	rs13106123
Chromosome Location	chr4:142004127-142004128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10007052	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10007212	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10454797	0.81[CEU][hapmap];0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs11100704	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11734543	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs11932194	0.85[CHB][hapmap]
rs13136132	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13141278	0.92[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13434447	0.85[CHB][hapmap]
rs17006859	0.85[CHB][hapmap]
rs17426280	0.85[CEU][hapmap];0.85[CHB][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28529555	0.90[ASN][1000 genomes]
rs4956346	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4956504	0.85[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4956509	0.81[CEU][hapmap];0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs4956510	1.00[CHB][hapmap]
rs6537029	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141996000-142006400	Weak transcription	Aorta	Aorta
2	chr4:141999200-142014000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:142000800-142031600	Weak transcription	Right Ventricle	heart
4	chr4:142001000-142014200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:142001200-142012600	Weak transcription	Ovary	ovary
6	chr4:142002200-142004200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:142002200-142006400	Weak transcription	Left Ventricle	heart
8	chr4:142002800-142004600	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:142003600-142015600	Weak transcription	Fetal Stomach	stomach
10	chr4:142003600-142021000	Weak transcription	Fetal Kidney	kidney
11	chr4:142003800-142004200	Weak transcription	Fetal Heart	heart
12	chr4:142003800-142004800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:142003800-142009000	Weak transcription	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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