Variant report

Variant	rs13106530
Chromosome Location	chr4:143655776-143655777
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10029622	0.80[ASN][1000 genomes]
rs10049507	0.84[EUR][1000 genomes]
rs11100756	0.84[EUR][1000 genomes]
rs13108947	0.84[EUR][1000 genomes]
rs13133396	0.84[EUR][1000 genomes]
rs1373664	0.84[EUR][1000 genomes]
rs1899564	0.84[EUR][1000 genomes]
rs2322814	0.84[EUR][1000 genomes]
rs28504492	0.84[ASN][1000 genomes]
rs28715653	0.80[ASN][1000 genomes]
rs34412123	0.84[EUR][1000 genomes]
rs35416729	0.84[EUR][1000 genomes]
rs35838997	0.84[EUR][1000 genomes]
rs35918867	0.84[EUR][1000 genomes]
rs36042265	0.84[EUR][1000 genomes]
rs7683763	0.80[ASN][1000 genomes]
rs9994239	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143642800-143664200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143650600-143655800	Weak transcription	Thymus	Thymus
3	chr4:143651000-143664400	Weak transcription	Aorta	Aorta
4	chr4:143653200-143664400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:143654400-143659800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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