Variant report

Variant	rs13106700
Chromosome Location	chr4:96560457-96560458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10006511	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10013217	0.85[ASN][1000 genomes]
rs10015906	0.85[ASN][1000 genomes]
rs10016846	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10016927	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10022798	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10025352	0.85[ASN][1000 genomes]
rs12506817	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12510917	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12644144	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12646265	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13129220	0.85[ASN][1000 genomes]
rs13131332	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1436590	0.90[ASN][1000 genomes]
rs1436591	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1436594	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1865852	0.90[ASN][1000 genomes]
rs28432792	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28480454	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28522563	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2865708	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34735998	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34888770	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35128711	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35163600	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35988502	0.90[ASN][1000 genomes]
rs4699269	0.90[ASN][1000 genomes]
rs5011717	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57688009	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs66961649	0.90[ASN][1000 genomes]
rs750915	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7659302	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7674945	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7680957	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7681580	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7682279	0.90[ASN][1000 genomes]
rs7697432	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7697645	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9884214	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9990668	0.85[ASN][1000 genomes]
rs9990964	0.85[ASN][1000 genomes]
rs9992379	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9994273	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830012	chr4:96547783-96746163	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1844506	chr4:96554889-96704333	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1007133	chr4:96556072-96614235	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96558200-96561600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:96558400-96561800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:96558600-96561600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:96558600-96561800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:96558600-96561800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:96558600-96561800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:96559800-96560600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:96559800-96561000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:96559800-96561000	Enhancers	Brain Cingulate Gyrus	brain
10	chr4:96559800-96561600	Flanking Active TSS	Dnd41	blood
11	chr4:96559800-96562200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:96559800-96562400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:96560000-96560600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:96560000-96560600	Enhancers	HMEC	breast
15	chr4:96560000-96560800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:96560000-96560800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr4:96560000-96562600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr4:96560200-96561000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr4:96560200-96562200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr4:96560200-96562600	Enhancers	Brain Anterior Caudate	brain
21	chr4:96560200-96562600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:96560400-96560600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr4:96560400-96560600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:96560400-96560600	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr4:96560400-96561000	Flanking Active TSS	Brain Substantia Nigra	brain
26	chr4:96560400-96561200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr4:96560400-96561600	Enhancers	Brain Hippocampus Middle	brain
28	chr4:96560400-96561800	Weak transcription	Fetal Lung	lung
29	chr4:96560400-96562200	Enhancers	Brain Angular Gyrus	brain

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