Variant report

Variant	rs13108497
Chromosome Location	chr4:144004486-144004487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144000802..144003856-chr4:144004297..144007579,3	K562	blood:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1104696	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1104697	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1105832	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11721635	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11722352	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11731763	0.94[ASN][1000 genomes]
rs11735113	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11736977	0.84[ASN][1000 genomes]
rs11933570	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12507884	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507913	0.94[ASN][1000 genomes]
rs12640644	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12644403	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13115992	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13122758	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13125763	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13126430	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13134924	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13139088	0.84[ASN][1000 genomes]
rs13148926	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1510142	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1588410	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1588411	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17017174	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17017180	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17017183	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17017184	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1949068	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1949069	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28431796	0.96[ASN][1000 genomes]
rs28496540	0.94[ASN][1000 genomes]
rs28623359	0.83[ASN][1000 genomes]
rs28644452	0.94[ASN][1000 genomes]
rs28660021	0.94[ASN][1000 genomes]
rs28660573	0.94[ASN][1000 genomes]
rs2874933	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35342016	0.94[ASN][1000 genomes]
rs35907067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3967114	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4054820	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4074924	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4074925	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4074926	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4076451	0.84[ASN][1000 genomes]
rs4077294	0.84[ASN][1000 genomes]
rs4234880	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4234884	0.84[ASN][1000 genomes]
rs4323053	0.94[ASN][1000 genomes]
rs4327439	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4367125	0.94[ASN][1000 genomes]
rs4374584	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4407448	0.94[ASN][1000 genomes]
rs4455368	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4473614	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4485768	0.94[ASN][1000 genomes]
rs4524335	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4690713	0.84[ASN][1000 genomes]
rs4690714	0.94[ASN][1000 genomes]
rs4690749	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4690752	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4690757	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4690759	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4690765	0.94[ASN][1000 genomes]
rs57921755	0.94[ASN][1000 genomes]
rs58401084	0.94[ASN][1000 genomes]
rs59799467	0.94[ASN][1000 genomes]
rs66633688	0.84[ASN][1000 genomes]
rs66750280	0.94[ASN][1000 genomes]
rs6821582	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6821603	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6821648	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72615966	0.94[ASN][1000 genomes]
rs7657896	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7676152	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676293	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7679943	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7681219	0.94[ASN][1000 genomes]
rs7685713	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7685774	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7686660	0.94[ASN][1000 genomes]
rs7692572	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7696633	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9985884	0.94[ASN][1000 genomes]
rs9985890	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9985893	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033285	chr4:143884298-144010784	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
2	nsv537288	chr4:143884298-144010784	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
3	nsv880176	chr4:143929235-144027729	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1034895	chr4:143945139-144079655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143993000-144005000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:143998000-144005000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:143998200-144021400	Weak transcription	Ovary	ovary
4	chr4:144002000-144008000	Enhancers	Fetal Intestine Small	intestine
5	chr4:144002600-144008000	Enhancers	Fetal Intestine Large	intestine
6	chr4:144003600-144004800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:144003600-144005400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr4:144003600-144005600	Enhancers	Adipose Nuclei	Adipose
9	chr4:144003800-144004600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr4:144003800-144006000	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr4:144003800-144006400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:144004000-144005000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:144004000-144005200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr4:144004200-144004600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:144004200-144004600	Enhancers	Fetal Lung	lung
16	chr4:144004400-144004600	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr4:144004400-144005200	Enhancers	HSMM	muscle
18	chr4:144004400-144006200	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links