Variant report

Variant	rs13109565
Chromosome Location	chr4:56991225-56991226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:56990498..56992393-chr4:56995607..56997336,2	K562	blood:
2	chr4:56986755..56988749-chr4:56988899..56991340,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10032508	0.84[ASN][1000 genomes]
rs10033958	0.85[ASN][1000 genomes]
rs13103602	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13121935	0.86[ASN][1000 genomes]
rs17743434	0.85[ASN][1000 genomes]
rs2412734	0.91[ASN][1000 genomes]
rs28426986	0.92[ASN][1000 genomes]
rs28488125	0.87[ASN][1000 genomes]
rs34048981	0.86[ASN][1000 genomes]
rs34081839	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34552342	0.87[ASN][1000 genomes]
rs34771783	0.90[ASN][1000 genomes]
rs35162069	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35352417	0.84[ASN][1000 genomes]
rs35572005	0.82[EUR][1000 genomes]
rs35623860	0.86[ASN][1000 genomes]
rs4142	0.86[ASN][1000 genomes]
rs4864568	0.84[ASN][1000 genomes]
rs4864570	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4865050	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4865051	0.85[ASN][1000 genomes]
rs4865052	0.85[ASN][1000 genomes]
rs4865053	0.86[ASN][1000 genomes]
rs4865054	0.86[ASN][1000 genomes]
rs56109611	0.85[ASN][1000 genomes]
rs6836927	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs6849646	0.84[ASN][1000 genomes]
rs9994666	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv999328	chr4:56942917-57041586	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1007114	chr4:56942917-57055381	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv999639	chr4:56942917-57401310	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv1014045	chr4:56942917-57404511	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv1012036	chr4:56963544-57106642	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56952000-57024400	Weak transcription	Fetal Intestine Small	intestine
2	chr4:56979000-56993800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:56979000-56993800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:56980600-56993800	Weak transcription	Fetal Lung	lung
5	chr4:56982400-56993800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:56984600-56993800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:56984800-56992400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:56984800-56993200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:56984800-56993200	Weak transcription	Brain Germinal Matrix	brain
10	chr4:56985200-56993800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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