Variant report

Variant	rs13114452
Chromosome Location	chr4:143565480-143565481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1031104	0.86[ASN][1000 genomes]
rs10857397	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11100754	0.82[ASN][1000 genomes]
rs1116690	0.88[ASN][1000 genomes]
rs11723809	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11943397	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11944455	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12500698	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12508480	0.81[ASN][1000 genomes]
rs12644329	0.82[ASN][1000 genomes]
rs13102191	0.94[ASN][1000 genomes]
rs13109603	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13109664	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13119090	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13125362	0.84[ASN][1000 genomes]
rs13125853	0.98[ASN][1000 genomes]
rs13133181	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1364921	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1364922	0.90[ASN][1000 genomes]
rs1364925	0.96[ASN][1000 genomes]
rs1373032	0.81[ASN][1000 genomes]
rs1373041	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1443185	0.83[ASN][1000 genomes]
rs1443186	0.83[ASN][1000 genomes]
rs1443187	0.81[ASN][1000 genomes]
rs1443191	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1899565	0.94[ASN][1000 genomes]
rs2017146	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2083781	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2120158	0.94[ASN][1000 genomes]
rs2165820	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2197216	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2217017	0.94[ASN][1000 genomes]
rs2874870	0.94[ASN][1000 genomes]
rs2874871	0.96[ASN][1000 genomes]
rs4690699	0.81[ASN][1000 genomes]
rs61371792	0.84[ASN][1000 genomes]
rs6537123	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6830053	0.86[ASN][1000 genomes]
rs6830886	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6831966	0.91[ASN][1000 genomes]
rs6839894	0.92[ASN][1000 genomes]
rs7434705	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7437824	0.81[ASN][1000 genomes]
rs7441478	0.92[ASN][1000 genomes]
rs7680076	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7680631	0.86[ASN][1000 genomes]
rs7695514	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7698691	0.89[ASN][1000 genomes]
rs979194	0.90[ASN][1000 genomes]
rs979195	0.90[ASN][1000 genomes]
rs979196	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143537000-143575800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143559200-143568600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:143564800-143569400	Weak transcription	Aorta	Aorta
4	chr4:143565000-143568200	Enhancers	Dnd41	blood
5	chr4:143565200-143566600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:143565400-143566400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:143565400-143566600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr4:143565400-143567600	Enhancers	Fetal Thymus	thymus

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