Variant report

Variant	rs13115343
Chromosome Location	chr4:103365532-103365533
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1038000	0.84[CEU][hapmap]
rs11097783	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12510679	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12513242	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13119968	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13132193	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13152048	1.00[CHD][hapmap]
rs17825737	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17825838	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4699028	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6817730	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs6846971	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs926163	1.00[CHB][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13115343	ADH6	cis	parietal	SCAN
rs13115343	NHEDC2	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103361400-103368200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:103361400-103369400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:103364200-103366400	Enhancers	Liver	Liver
4	chr4:103364200-103366400	Enhancers	HepG2	liver
5	chr4:103364800-103365800	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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