Variant report

Variant	rs13115795
Chromosome Location	chr4:87825433-87825434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10011798	0.96[ASN][1000 genomes]
rs10015121	0.96[ASN][1000 genomes]
rs10015477	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10021020	0.90[ASN][1000 genomes]
rs10021790	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10034336	0.98[ASN][1000 genomes]
rs1010902	0.93[ASN][1000 genomes]
rs1010903	0.93[ASN][1000 genomes]
rs11097123	0.80[ASN][1000 genomes]
rs13120981	0.90[ASN][1000 genomes]
rs13137483	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17012132	0.83[ASN][1000 genomes]
rs1985944	0.93[ASN][1000 genomes]
rs2121871	0.90[ASN][1000 genomes]
rs28446826	0.95[ASN][1000 genomes]
rs28641910	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28650493	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28716151	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35428486	0.89[ASN][1000 genomes]
rs55698195	0.84[ASN][1000 genomes]
rs56201068	0.88[ASN][1000 genomes]
rs6823051	0.93[ASN][1000 genomes]
rs6846822	0.96[ASN][1000 genomes]
rs72667703	0.93[ASN][1000 genomes]
rs72667705	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1013308	chr4:87769694-87870168	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv508297	chr4:87778783-87868508	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1009937	chr4:87795314-88008345	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87814200-87829400	Weak transcription	K562	blood
2	chr4:87814600-87830000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:87822400-87829800	Weak transcription	Placenta	Placenta
4	chr4:87825000-87825600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:87825000-87825600	Active TSS	Rectal Mucosa Donor 31	rectum
6	chr4:87825000-87825600	Active TSS	Osteobl	bone
7	chr4:87825000-87825800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr4:87825000-87825800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:87825000-87825800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:87825000-87825800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
11	chr4:87825000-87825800	Active TSS	Primary B cells from cord blood	blood
12	chr4:87825000-87825800	Active TSS	Primary T cells from cord blood	blood
13	chr4:87825000-87825800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:87825000-87825800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:87825000-87825800	Active TSS	Brain Angular Gyrus	brain
16	chr4:87825000-87825800	Active TSS	Brain Anterior Caudate	brain
17	chr4:87825000-87825800	Active TSS	Brain Cingulate Gyrus	brain
18	chr4:87825000-87825800	Active TSS	Brain Hippocampus Middle	brain
19	chr4:87825000-87825800	Active TSS	Brain Substantia Nigra	brain
20	chr4:87825000-87825800	Active TSS	Colon Smooth Muscle	Colon
21	chr4:87825000-87825800	Active TSS	Duodenum Mucosa	Duodenum
22	chr4:87825000-87825800	Active TSS	Esophagus	oesophagus
23	chr4:87825000-87825800	Active TSS	Fetal Intestine Small	intestine
24	chr4:87825000-87825800	Active TSS	Fetal Kidney	kidney
25	chr4:87825000-87825800	Active TSS	Fetal Lung	lung
26	chr4:87825000-87825800	Active TSS	Ovary	ovary
27	chr4:87825000-87825800	Active TSS	Pancreas	Pancrea
28	chr4:87825000-87825800	Active TSS	Rectal Mucosa Donor 29	rectum
29	chr4:87825000-87825800	Active TSS	Rectal Smooth Muscle	rectum
30	chr4:87825000-87825800	Active TSS	Right Atrium	heart
31	chr4:87825000-87825800	Active TSS	NHDF-Ad	bronchial
32	chr4:87825000-87826000	Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr4:87825000-87826000	Flanking Active TSS	Adipose Nuclei	Adipose
34	chr4:87825000-87826000	Active TSS	Pancreatic Islets	Pancreatic Islet
35	chr4:87825200-87825600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr4:87825200-87825600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
37	chr4:87825200-87825600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr4:87825200-87825600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
39	chr4:87825200-87825600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:87825200-87825600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
41	chr4:87825200-87825600	Flanking Active TSS	Primary hematopoietic stem cells	blood
42	chr4:87825200-87825600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
43	chr4:87825200-87825600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
44	chr4:87825200-87825600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
45	chr4:87825200-87825600	Bivalent/Poised TSS	Primary T killer naive cells fromperipheralblood	blood
46	chr4:87825200-87825600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
47	chr4:87825200-87825600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:87825200-87825600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr4:87825200-87825600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr4:87825200-87825600	Active TSS	Aorta	Aorta

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