Variant report

Variant	rs13115869
Chromosome Location	chr4:143633482-143633483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143629918..143632766-chr4:143633001..143634713,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10049507	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11100756	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11732995	0.93[AFR][1000 genomes]
rs13108947	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13116732	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13133396	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13135210	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13140375	1.00[JPT][hapmap]
rs13140998	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13141068	1.00[CEU][hapmap]
rs1373033	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1373664	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1899564	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2322814	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28685292	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34032529	0.83[AMR][1000 genomes]
rs34241470	1.00[AMR][1000 genomes]
rs34412123	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34611963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35053070	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35416729	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35838997	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35918867	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36042265	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6835296	1.00[JPT][hapmap]
rs9994239	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143620800-143642000	Weak transcription	Fetal Heart	heart
2	chr4:143625200-143641600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:143629600-143634000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr4:143629800-143634400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr4:143630200-143640600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr4:143630800-143650200	Weak transcription	Aorta	Aorta
7	chr4:143631400-143636800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr4:143631800-143636600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:143632200-143634000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr4:143632200-143634000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr4:143632200-143634200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr4:143632200-143634800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:143632400-143634000	Weak transcription	Dnd41	blood
14	chr4:143632400-143640200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:143632600-143633800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr4:143632600-143634000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr4:143633400-143636800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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