Variant report

Variant	rs13116507
Chromosome Location	chr4:144039438-144039439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10000911	0.88[CHD][hapmap];0.88[JPT][hapmap];0.88[TSI][hapmap];0.86[ASN][1000 genomes]
rs10002888	0.86[ASN][1000 genomes]
rs10004364	0.87[ASN][1000 genomes]
rs10004598	0.88[ASN][1000 genomes]
rs10009906	0.86[ASN][1000 genomes]
rs10011709	0.82[ASN][1000 genomes]
rs10012434	0.82[ASN][1000 genomes]
rs10015190	0.82[ASN][1000 genomes]
rs10015279	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10015751	0.86[ASN][1000 genomes]
rs10019249	0.82[ASN][1000 genomes]
rs10028434	0.81[ASN][1000 genomes]
rs10033104	0.86[ASN][1000 genomes]
rs10034769	0.88[ASN][1000 genomes]
rs10155434	0.86[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10434185	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10857405	0.88[ASN][1000 genomes]
rs11100770	0.88[ASN][1000 genomes]
rs11100771	0.88[ASN][1000 genomes]
rs11100772	0.85[ASN][1000 genomes]
rs11100778	0.81[ASN][1000 genomes]
rs11100779	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11100780	0.94[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs11100781	0.86[ASN][1000 genomes]
rs11722352	0.81[AFR][1000 genomes]
rs11724872	0.94[CHD][hapmap];0.94[JPT][hapmap]
rs11725565	0.94[JPT][hapmap]
rs11732484	0.86[ASN][1000 genomes]
rs11933603	0.94[JPT][hapmap]
rs11947142	0.85[ASN][1000 genomes]
rs12501994	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs12640698	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12649219	0.86[ASN][1000 genomes]
rs13102238	0.87[ASN][1000 genomes]
rs13106497	0.94[JPT][hapmap]
rs13113047	0.86[ASN][1000 genomes]
rs13118943	0.83[ASN][1000 genomes]
rs13137565	0.82[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13138084	0.86[ASN][1000 genomes]
rs13139457	0.94[JPT][hapmap]
rs13140643	0.82[ASN][1000 genomes]
rs13151561	0.86[ASN][1000 genomes]
rs1440412	0.84[ASN][1000 genomes]
rs1440414	0.86[ASN][1000 genomes]
rs1440418	0.86[ASN][1000 genomes]
rs1440419	0.86[ASN][1000 genomes]
rs2323076	0.86[ASN][1000 genomes]
rs2323077	0.86[ASN][1000 genomes]
rs28592151	0.82[ASN][1000 genomes]
rs300921	0.84[ASN][1000 genomes]
rs300924	0.84[ASN][1000 genomes]
rs300925	0.84[ASN][1000 genomes]
rs300934	0.86[ASN][1000 genomes]
rs300938	0.86[ASN][1000 genomes]
rs300940	0.86[ASN][1000 genomes]
rs300941	0.86[ASN][1000 genomes]
rs34664017	0.82[ASN][1000 genomes]
rs3910622	0.86[ASN][1000 genomes]
rs4131029	0.94[JPT][hapmap]
rs4132266	0.94[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs4234886	0.94[CHD][hapmap];0.94[JPT][hapmap]
rs4285045	0.82[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.86[ASN][1000 genomes]
rs4318600	0.88[ASN][1000 genomes]
rs4323054	0.88[ASN][1000 genomes]
rs4323055	0.88[ASN][1000 genomes]
rs4333135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4336176	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4413361	0.86[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4502634	0.88[ASN][1000 genomes]
rs4511955	0.85[ASN][1000 genomes]
rs4513514	0.94[JPT][hapmap]
rs4561881	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4566607	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4579067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4626148	0.88[ASN][1000 genomes]
rs4690715	1.00[JPT][hapmap]
rs4690771	0.88[ASN][1000 genomes]
rs4690775	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs4690779	0.94[JPT][hapmap]
rs4690780	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs534750	0.86[ASN][1000 genomes]
rs587254	0.86[ASN][1000 genomes]
rs632359	0.86[ASN][1000 genomes]
rs6537150	0.88[ASN][1000 genomes]
rs6537151	0.88[ASN][1000 genomes]
rs6812522	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6818149	0.94[JPT][hapmap]
rs6820340	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6826771	0.86[ASN][1000 genomes]
rs6829621	0.88[ASN][1000 genomes]
rs6839312	0.86[ASN][1000 genomes]
rs6845478	0.86[ASN][1000 genomes]
rs6845907	0.86[ASN][1000 genomes]
rs6848475	0.86[ASN][1000 genomes]
rs6854861	0.88[ASN][1000 genomes]
rs6856785	0.86[ASN][1000 genomes]
rs72719159	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72719160	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72719163	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72719173	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72719179	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72719180	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7435424	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7436840	0.83[ASN][1000 genomes]
rs7656276	0.82[ASN][1000 genomes]
rs7670439	0.82[ASN][1000 genomes]
rs7673827	0.86[ASN][1000 genomes]
rs7675127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676152	0.82[AFR][1000 genomes]
rs7680365	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7685075	0.88[ASN][1000 genomes]
rs7685461	0.88[ASN][1000 genomes]
rs7687417	0.82[ASN][1000 genomes]
rs7692813	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7693583	0.88[ASN][1000 genomes]
rs7693817	0.88[ASN][1000 genomes]
rs9631769	0.88[ASN][1000 genomes]
rs9790396	0.88[ASN][1000 genomes]
rs9790822	0.88[ASN][1000 genomes]
rs9992676	0.86[ASN][1000 genomes]
rs9996072	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9998017	0.82[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034895	chr4:143945139-144079655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13116507	SLC10A7	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144039400-144040400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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