Variant report

Variant	rs13121251
Chromosome Location	chr4:143829759-143829760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10004713	0.82[ASN][1000 genomes]
rs10014390	0.82[ASN][1000 genomes]
rs10017013	0.82[ASN][1000 genomes]
rs10019031	0.92[ASN][1000 genomes]
rs10028292	0.82[ASN][1000 genomes]
rs10033548	0.82[ASN][1000 genomes]
rs13122950	0.82[ASN][1000 genomes]
rs13126927	0.82[ASN][1000 genomes]
rs13147030	0.82[ASN][1000 genomes]
rs13151684	0.82[ASN][1000 genomes]
rs1372236	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372237	0.82[ASN][1000 genomes]
rs1372238	0.89[ASN][1000 genomes]
rs1372239	0.90[ASN][1000 genomes]
rs1441413	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441414	0.90[ASN][1000 genomes]
rs1510139	0.82[ASN][1000 genomes]
rs1605954	0.82[ASN][1000 genomes]
rs1605955	0.82[ASN][1000 genomes]
rs1876938	0.82[ASN][1000 genomes]
rs1876939	0.82[ASN][1000 genomes]
rs1899319	0.82[ASN][1000 genomes]
rs2003851	0.82[ASN][1000 genomes]
rs2083619	0.82[ASN][1000 genomes]
rs2120843	0.82[ASN][1000 genomes]
rs2120844	0.91[ASN][1000 genomes]
rs2166187	0.82[ASN][1000 genomes]
rs2322908	0.82[ASN][1000 genomes]
rs28390284	0.82[ASN][1000 genomes]
rs28404663	0.82[ASN][1000 genomes]
rs28560068	0.82[ASN][1000 genomes]
rs28693771	0.82[ASN][1000 genomes]
rs28749775	0.82[ASN][1000 genomes]
rs28789215	0.89[ASN][1000 genomes]
rs28814581	0.82[ASN][1000 genomes]
rs28814625	0.82[ASN][1000 genomes]
rs28849788	0.82[ASN][1000 genomes]
rs28854016	0.82[ASN][1000 genomes]
rs34499804	0.90[ASN][1000 genomes]
rs34959108	0.82[ASN][1000 genomes]
rs35582432	0.82[ASN][1000 genomes]
rs4690706	0.82[ASN][1000 genomes]
rs4690708	0.82[ASN][1000 genomes]
rs4690709	0.92[ASN][1000 genomes]
rs4690733	0.92[ASN][1000 genomes]
rs4690734	0.82[ASN][1000 genomes]
rs4690735	0.82[ASN][1000 genomes]
rs4690736	0.82[ASN][1000 genomes]
rs6537135	0.92[ASN][1000 genomes]
rs6537136	0.82[ASN][1000 genomes]
rs6826496	0.90[ASN][1000 genomes]
rs6833501	0.82[ASN][1000 genomes]
rs6840593	0.82[ASN][1000 genomes]
rs6847097	0.82[ASN][1000 genomes]
rs732600	0.82[ASN][1000 genomes]
rs732601	0.82[ASN][1000 genomes]
rs7683234	0.82[ASN][1000 genomes]
rs7683834	0.92[ASN][1000 genomes]
rs7688031	0.82[ASN][1000 genomes]
rs7699632	0.82[ASN][1000 genomes]
rs9308153	0.82[ASN][1000 genomes]
rs9308154	0.92[ASN][1000 genomes]
rs9683718	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv880175	chr4:143779613-143892252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv10580	chr4:143794158-143856359	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv830102	chr4:143820268-143953611	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143822600-143831200	Weak transcription	Stomach Smooth Muscle	stomach

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