Variant report

Variant	rs13126430
Chromosome Location	chr4:143998282-143998283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1104696	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1104697	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1105832	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11721635	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11722352	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11731763	0.94[ASN][1000 genomes]
rs11735113	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11736977	0.84[ASN][1000 genomes]
rs11933570	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12507884	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507913	0.94[ASN][1000 genomes]
rs12640644	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12644403	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13108497	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13115992	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13122758	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13125763	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13134924	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13139088	0.84[ASN][1000 genomes]
rs13148926	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1355259	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs1510142	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1588410	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1588411	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17017174	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17017180	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17017183	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17017184	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1949068	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1949069	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28431796	0.96[ASN][1000 genomes]
rs28496540	0.94[ASN][1000 genomes]
rs28623359	0.83[ASN][1000 genomes]
rs28644452	0.94[ASN][1000 genomes]
rs28660021	0.94[ASN][1000 genomes]
rs28660573	0.94[ASN][1000 genomes]
rs2874933	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35342016	0.94[ASN][1000 genomes]
rs35907067	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3967114	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4054820	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4074924	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4074925	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4074926	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4076451	0.84[ASN][1000 genomes]
rs4077294	0.84[ASN][1000 genomes]
rs4234880	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4234884	0.84[ASN][1000 genomes]
rs4323053	0.94[ASN][1000 genomes]
rs4327439	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4367125	0.94[ASN][1000 genomes]
rs4374584	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4407448	0.94[ASN][1000 genomes]
rs4455368	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4473614	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4485768	0.94[ASN][1000 genomes]
rs4524335	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4619836	1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs4690713	0.84[ASN][1000 genomes]
rs4690714	0.94[ASN][1000 genomes]
rs4690749	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4690752	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4690755	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs4690757	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4690759	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4690765	0.94[ASN][1000 genomes]
rs57921755	0.94[ASN][1000 genomes]
rs58401084	0.94[ASN][1000 genomes]
rs59799467	0.94[ASN][1000 genomes]
rs66633688	0.84[ASN][1000 genomes]
rs66750280	0.94[ASN][1000 genomes]
rs6821582	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6821603	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6821648	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72615966	0.94[ASN][1000 genomes]
rs7657896	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7676152	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676293	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7679943	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7681219	0.94[ASN][1000 genomes]
rs7685713	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7685774	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7686660	0.94[ASN][1000 genomes]
rs7692572	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7696633	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9985884	0.94[ASN][1000 genomes]
rs9985890	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9985893	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9991766	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033285	chr4:143884298-144010784	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
2	nsv537288	chr4:143884298-144010784	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
3	nsv880176	chr4:143929235-144027729	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1034895	chr4:143945139-144079655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143993000-144005000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:143996800-143999600	Enhancers	Fetal Intestine Large	intestine
3	chr4:143997800-143998400	Active TSS	Duodenum Mucosa	Duodenum
4	chr4:143998000-144002000	Weak transcription	Fetal Intestine Small	intestine
5	chr4:143998000-144005000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr4:143998200-143998800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr4:143998200-144021400	Weak transcription	Ovary	ovary

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