Variant report

Variant	rs13128485
Chromosome Location	chr4:103253183-103253184
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103252939..103254860-chr4:103257472..103259023,2	K562	blood:
2	chr4:103253150..103255312-chr4:103264319..103266644,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138821	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10856967	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11097774	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097778	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11730344	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11731743	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11733421	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734743	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11932504	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13105296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13112672	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13134240	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13140586	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13142626	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13150460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13152048	1.00[JPT][hapmap]
rs17278473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33940030	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35684057	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4518246	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4698846	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699022	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699023	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103182000-103255400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr4:103210400-103256800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr4:103224000-103263600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:103237400-103264000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:103239000-103256800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr4:103241200-103263600	Weak transcription	Liver	Liver
7	chr4:103241200-103263600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:103242600-103263400	Weak transcription	Lung	lung
9	chr4:103242800-103259600	Weak transcription	K562	blood
10	chr4:103243200-103256400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr4:103243400-103257000	Weak transcription	Dnd41	blood
12	chr4:103243400-103258600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:103243800-103255000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:103243800-103256800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:103244000-103262000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr4:103244000-103262000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:103244200-103255200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr4:103244600-103260200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr4:103245000-103257200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr4:103245000-103257400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr4:103245200-103253400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr4:103246000-103253400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr4:103249800-103260200	Weak transcription	Hela-S3	cervix
24	chr4:103250000-103260600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr4:103251800-103255800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr4:103252000-103261600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr4:103253000-103256400	Weak transcription	Primary T cells from cord blood	blood

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