Variant report

Variant	rs13128524
Chromosome Location	chr4:96572574-96572575
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11727158	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11727175	0.84[ASN][1000 genomes]
rs11728071	0.87[GIH][hapmap];0.80[TSI][hapmap];0.84[ASN][1000 genomes]
rs11728078	0.82[ASN][1000 genomes]
rs11731544	0.84[ASN][1000 genomes]
rs13105402	0.84[ASN][1000 genomes]
rs13119412	0.84[ASN][1000 genomes]
rs13129346	0.84[ASN][1000 genomes]
rs13129580	0.81[ASN][1000 genomes]
rs13129583	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13130278	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17024349	0.85[CEU][hapmap];0.81[CHB][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2043657	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35403357	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4699438	0.84[ASN][1000 genomes]
rs4699439	0.84[ASN][1000 genomes]
rs6841996	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7658020	1.00[JPT][hapmap]
rs987382	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830012	chr4:96547783-96746163	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1844506	chr4:96554889-96704333	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1007133	chr4:96556072-96614235	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13128524	ATOH1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96562800-96572600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:96572000-96572800	Enhancers	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links