Variant report

Variant	rs13129988
Chromosome Location	chr4:87215043-87215044
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10031237	1.00[AFR][1000 genomes]
rs10031990	1.00[AFR][1000 genomes]
rs13134099	1.00[AFR][1000 genomes]
rs34238796	1.00[AFR][1000 genomes]
rs34241060	1.00[AFR][1000 genomes]
rs34641637	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35788198	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv999470	chr4:87165663-87514552	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537164	chr4:87165663-87514552	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv934210	chr4:87197339-87325578	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87201000-87215200	Weak transcription	Brain Angular Gyrus	brain
2	chr4:87208000-87215800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr4:87208200-87215800	Weak transcription	Fetal Stomach	stomach
4	chr4:87208400-87215200	Weak transcription	Brain Germinal Matrix	brain
5	chr4:87212800-87219000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:87213600-87216200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:87214600-87215200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:87214800-87215400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:87214800-87215600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:87214800-87215600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:87214800-87215600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:87214800-87215800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr4:87214800-87216600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:87214800-87217600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr4:87215000-87215200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:87215000-87215200	Enhancers	Aorta	Aorta
17	chr4:87215000-87215800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:87215000-87216400	Enhancers	Brain Anterior Caudate	brain
19	chr4:87215000-87222600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links