Variant report

Variant	rs13130995
Chromosome Location	chr4:144162754-144162755
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144144729..144146832-chr4:144161268..144163289,2	K562	blood:

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10000831	0.83[ASN][1000 genomes]
rs10461277	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461278	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461279	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519679	0.95[EUR][1000 genomes]
rs1108827	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11933189	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935914	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11941742	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11945672	1.00[ASN][1000 genomes]
rs12711407	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13104755	0.82[AMR][1000 genomes]
rs13105227	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105258	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13107986	0.88[AMR][1000 genomes]
rs13111543	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13113118	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13113907	0.83[ASN][1000 genomes]
rs13118809	0.82[AMR][1000 genomes]
rs13127055	0.82[AMR][1000 genomes]
rs13131510	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13137712	0.88[AMR][1000 genomes]
rs13140326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141368	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141417	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13142436	0.80[EUR][1000 genomes]
rs13145081	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17017424	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17679196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2102494	0.83[ASN][1000 genomes]
rs28452225	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28654139	0.83[ASN][1000 genomes]
rs28797214	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28891127	0.83[ASN][1000 genomes]
rs300907	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs300932	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300933	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300937	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300942	0.81[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs300944	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs300945	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs300950	0.90[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34176541	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34192902	0.94[AMR][1000 genomes]
rs34198661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34225955	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34376112	0.83[ASN][1000 genomes]
rs34398038	0.88[AMR][1000 genomes]
rs34461753	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34474130	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34589296	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34652171	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34770317	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34780033	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35021023	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35027946	0.88[AMR][1000 genomes]
rs35095943	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35143494	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35305979	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35311425	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35416586	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35549285	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35607189	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35887480	0.95[EUR][1000 genomes]
rs35909303	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35971728	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35988039	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4554015	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690751	0.83[ASN][1000 genomes]
rs4690772	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55693016	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55846476	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56085707	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56142323	0.93[EUR][1000 genomes]
rs603861	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603934	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs604746	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537143	0.83[ASN][1000 genomes]
rs6834491	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6842633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853356	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857448	0.83[ASN][1000 genomes]
rs686770	0.85[EUR][1000 genomes]
rs71610408	0.83[ASN][1000 genomes]
rs71610420	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610422	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610423	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610427	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610428	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610429	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610431	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71610432	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71610438	0.82[AMR][1000 genomes]
rs71610440	0.82[AMR][1000 genomes]
rs71610442	0.82[AMR][1000 genomes]
rs726022	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7655033	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661883	0.83[ASN][1000 genomes]
rs7663712	0.88[AMR][1000 genomes]
rs7670050	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7670426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7674403	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9637656	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994551	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9997167	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144156200-144172600	Weak transcription	Right Atrium	heart
2	chr4:144160800-144162800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:144160800-144163600	Enhancers	Fetal Intestine Small	intestine
4	chr4:144161400-144163600	Enhancers	Fetal Intestine Large	intestine
5	chr4:144161600-144163400	Enhancers	Stomach Smooth Muscle	stomach
6	chr4:144161600-144163400	Enhancers	HepG2	liver
7	chr4:144161600-144163600	Enhancers	K562	blood
8	chr4:144161800-144163800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:144162200-144163600	Enhancers	Rectal Smooth Muscle	rectum
10	chr4:144162400-144163600	Enhancers	HMEC	breast
11	chr4:144162400-144163800	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links