Variant report

Variant	rs13132722
Chromosome Location	chr4:103332834-103332835
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103307851..103309753-chr4:103332388..103335045,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10856967	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11097774	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11097778	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11097781	0.85[EUR][1000 genomes]
rs11097782	0.85[EUR][1000 genomes]
rs11730344	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11731743	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11733421	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11734743	0.81[AMR][1000 genomes]
rs11932504	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12513230	0.85[EUR][1000 genomes]
rs12513242	0.85[EUR][1000 genomes]
rs12513366	0.85[EUR][1000 genomes]
rs13105296	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13112672	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13113284	0.85[EUR][1000 genomes]
rs13122985	0.84[EUR][1000 genomes]
rs13132235	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13134240	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13140586	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13142626	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13150351	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13150460	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2169595	0.85[EUR][1000 genomes]
rs2169596	0.85[EUR][1000 genomes]
rs33940030	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35684057	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4518246	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4648016	1.00[JPT][hapmap]
rs4698846	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4699022	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4699023	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4699025	0.84[EUR][1000 genomes]
rs4699028	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3322194	chr4:103328029-103333627	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3425648	chr4:103328629-103333077	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3512084	chr4:103328732-103333477	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3322277	chr4:103328979-103332977	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3345195	chr4:103329354-103333302	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103325000-103341600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:103332200-103333400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:103332200-103333600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:103332200-103333600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr4:103332200-103333600	Enhancers	Hela-S3	cervix
6	chr4:103332200-103333600	Enhancers	NHDF-Ad	bronchial
7	chr4:103332400-103333000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr4:103332600-103333200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links