Variant report

Variant	rs13133181
Chromosome Location	chr4:143610293-143610294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1031104	0.90[CHB][hapmap];0.89[MEX][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10857397	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10857399	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs11100754	0.81[JPT][hapmap]
rs1116690	0.81[ASN][1000 genomes]
rs11723809	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11942731	0.81[YRI][hapmap]
rs11943397	0.93[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11944455	0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12500698	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13102191	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13109603	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13109664	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13114452	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13119090	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13125853	0.92[ASN][1000 genomes]
rs1364921	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1364922	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1364925	1.00[ASW][hapmap];0.88[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1373041	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1441417	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs1443187	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs1443191	0.92[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17016768	0.81[CHB][hapmap]
rs1867215	0.82[EUR][1000 genomes]
rs1899565	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2017146	0.87[ASW][hapmap];0.96[CEU][hapmap];0.83[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2083781	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2120158	0.93[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2165820	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2197216	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2217017	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2874870	0.93[ASW][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2874871	0.88[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs331945	0.81[CHB][hapmap]
rs4975311	0.80[AMR][1000 genomes]
rs6537123	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6537129	0.81[CHB][hapmap]
rs6830053	0.90[CHB][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6830886	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6831966	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6839158	0.90[CHB][hapmap]
rs6839894	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7434705	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7441478	0.85[ASN][1000 genomes]
rs7656375	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs7663475	0.81[CHB][hapmap]
rs7666140	0.81[CHB][hapmap]
rs7680076	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7680631	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7695514	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7698691	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs978361	0.81[CHB][hapmap]
rs979194	0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs979195	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs979196	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143585600-143613000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143607200-143612000	Enhancers	Fetal Heart	heart
3	chr4:143607600-143611800	Weak transcription	Left Ventricle	heart
4	chr4:143607800-143611000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:143607800-143611000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:143607800-143611800	Weak transcription	Dnd41	blood
7	chr4:143607800-143613600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr4:143608200-143611600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:143609200-143615800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr4:143609800-143613800	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr4:143610200-143617000	Weak transcription	Thymus	Thymus

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