Variant report

Variant	rs13133972
Chromosome Location	chr4:81961607-81961608
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:81283592..81284206-chr4:81961033..81961793,2	K562	blood:
2	chr4:81283280..81284253-chr4:81960976..81961810,2	MCF-7	breast:
3	chr4:81283608..81284439-chr4:81960869..81961835,3	MCF-7	breast:
4	chr4:81955196..81958140-chr4:81960309..81962642,2	K562	blood:
5	chr4:81910904..81911808-chr4:81961317..81961859,2	MCF-7	breast:
6	chr4:81286710..81287784-chr4:81960924..81961852,5	MCF-7	breast:
7	chr4:81282233..81283176-chr4:81960486..81961821,6	MCF-7	breast:
8	chr4:81282234..81283281-chr4:81960825..81961642,3	MCF-7	breast:

No data

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10005851	0.84[JPT][hapmap]
rs10007784	0.84[JPT][hapmap]
rs10019046	0.85[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516738	0.82[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11099459	0.85[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642476	0.85[JPT][hapmap]
rs13122304	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138361	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13141362	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495634	0.85[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495637	0.82[JPT][hapmap]
rs17005034	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2903746	0.84[JPT][hapmap]
rs34042179	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34094604	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3733549	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4389567	0.84[JPT][hapmap]
rs6831641	0.90[CHB][hapmap];0.82[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71596047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7659948	0.96[EUR][1000 genomes]
rs7661611	0.82[CEU][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7697151	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs924048	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985328	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81955000-81973400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:81955400-81967200	Weak transcription	Fetal Stomach	stomach
3	chr4:81958800-81961800	Enhancers	Colon Smooth Muscle	Colon
4	chr4:81958800-81961800	Enhancers	Rectal Smooth Muscle	rectum
5	chr4:81960200-81961800	Enhancers	Fetal Intestine Large	intestine
6	chr4:81960400-81973400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:81960800-81963400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:81960800-81967000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:81961000-81962200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr4:81961000-81967000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:81961200-81971000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:81961400-81973200	Weak transcription	Primary B cells from cord blood	blood
13	chr4:81961600-81967000	Weak transcription	Ovary	ovary
14	chr4:81961600-81967000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr4:81961600-81973400	Weak transcription	Fetal Intestine Small	intestine

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