Variant report

Variant	rs13134382
Chromosome Location	chr4:86618803-86618804
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86618422..86620662-chr4:86620874..86623828,2	K562	blood:
2	chr4:86614998..86617949-chr4:86618338..86620197,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10017047	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs10033273	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs1014642	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11735639	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs12505724	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12506038	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12507198	0.86[JPT][hapmap]
rs12507272	0.84[CHB][hapmap]
rs12509904	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12510148	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12510813	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs12513384	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs13102863	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13106553	0.85[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs13108523	0.85[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs13110928	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs13127367	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs13128115	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs13136153	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13137575	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs13139248	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13146939	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs13147689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13152150	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs17010632	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs17010857	0.88[YRI][hapmap]
rs1871864	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs1871865	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs1966862	0.88[YRI][hapmap]
rs2004613	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs34056429	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34820504	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs35250811	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35341700	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs35472747	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs35577842	0.85[ASN][1000 genomes]
rs3889735	0.90[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4413396	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs4693731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4693734	0.80[ASN][1000 genomes]
rs4693735	0.81[CHB][hapmap];0.81[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs58146546	0.85[ASN][1000 genomes]
rs6531854	0.82[JPT][hapmap]
rs6813860	0.85[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs71599423	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72974953	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7439720	0.82[JPT][hapmap]
rs7676486	0.85[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs900204	0.85[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs931195	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86591400-86619400	Weak transcription	Pancreas	Pancrea
2	chr4:86604200-86624000	Weak transcription	HSMM	muscle
3	chr4:86615000-86624200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:86615000-86624600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:86617600-86624000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr4:86617800-86620400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr4:86618200-86619200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:86618200-86621800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:86618200-86622800	Weak transcription	NHDF-Ad	bronchial
10	chr4:86618600-86619400	Enhancers	Stomach Mucosa	stomach
11	chr4:86618600-86625200	Enhancers	Primary B cells from peripheral blood	blood
12	chr4:86618800-86619600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr4:86618800-86620400	Genic enhancers	Primary B cells from cord blood	blood

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