Variant report

Variant	rs13137693
Chromosome Location	chr4:20466133-20466134
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10025733	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13151540	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1902845	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs474495	0.82[EUR][1000 genomes]
rs475942	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs491795	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60079457	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs609114	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs625614	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs669852	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs673846	0.82[EUR][1000 genomes]
rs7691135	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9998254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878741	chr4:20440476-20486230	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3390283	chr4:20464254-20466302	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20449600-20486000	Weak transcription	Fetal Lung	lung
2	chr4:20464000-20466600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:20464600-20466200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:20464600-20532600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:20465000-20495000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:20465600-20466400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:20465600-20466600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:20465600-20466600	Enhancers	NHDF-Ad	bronchial
9	chr4:20465600-20466600	Enhancers	NHEK	skin
10	chr4:20465600-20466800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:20465600-20466800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr4:20465600-20466800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:20465800-20466400	Enhancers	HMEC	breast
14	chr4:20466000-20466400	Enhancers	NHLF	lung
15	chr4:20466000-20466400	Flanking Active TSS	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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