Variant report

Variant	rs13138921
Chromosome Location	chr4:80166157-80166158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11098595	0.85[AFR][1000 genomes]
rs12504676	0.85[AFR][1000 genomes]
rs12643994	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12648205	0.90[AFR][1000 genomes]
rs12650537	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs13145326	0.81[AFR][1000 genomes]
rs28528138	0.83[AFR][1000 genomes]
rs4425403	0.88[AFR][1000 genomes]
rs4470657	0.90[AFR][1000 genomes]
rs4502706	0.88[AFR][1000 genomes]
rs4519821	0.90[AFR][1000 genomes]
rs4535355	0.88[AFR][1000 genomes]
rs4571359	0.85[AFR][1000 genomes]
rs4571360	0.90[AFR][1000 genomes]
rs4975171	0.85[AFR][1000 genomes]
rs4975172	0.88[AFR][1000 genomes]
rs6534217	0.85[AFR][1000 genomes]
rs6810580	0.90[AFR][1000 genomes]
rs6826564	0.80[AFR][1000 genomes]
rs6827253	0.88[AFR][1000 genomes]
rs6837864	0.90[AFR][1000 genomes]
rs7656444	0.88[AFR][1000 genomes]
rs7673022	0.88[AFR][1000 genomes]
rs7679438	0.90[AFR][1000 genomes]
rs7695330	0.90[AFR][1000 genomes]
rs9307489	0.90[AFR][1000 genomes]
rs9715410	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80159800-80166400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:80165400-80171200	Weak transcription	K562	blood
3	chr4:80165400-80194000	Weak transcription	Aorta	Aorta
4	chr4:80166000-80166600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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