Variant report

Variant	rs13138930
Chromosome Location	chr4:96561528-96561529
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10017031	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11941922	0.84[AMR][1000 genomes]
rs12648109	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1436572	0.84[AMR][1000 genomes]
rs1436592	0.84[AMR][1000 genomes]
rs2903066	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4529056	0.84[AMR][1000 genomes]
rs7681706	0.84[AMR][1000 genomes]
rs7698569	0.85[CHB][hapmap];0.83[EUR][1000 genomes]
rs992852	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830012	chr4:96547783-96746163	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1844506	chr4:96554889-96704333	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1007133	chr4:96556072-96614235	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96558200-96561600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:96558400-96561800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:96558600-96561600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:96558600-96561800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:96558600-96561800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:96558600-96561800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:96559800-96561600	Flanking Active TSS	Dnd41	blood
8	chr4:96559800-96562200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:96559800-96562400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:96560000-96562600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr4:96560200-96562200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:96560200-96562600	Enhancers	Brain Anterior Caudate	brain
13	chr4:96560200-96562600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr4:96560400-96561600	Enhancers	Brain Hippocampus Middle	brain
15	chr4:96560400-96561800	Weak transcription	Fetal Lung	lung
16	chr4:96560400-96562200	Enhancers	Brain Angular Gyrus	brain
17	chr4:96560800-96561800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr4:96560800-96562200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr4:96561000-96562200	Flanking Active TSS	Brain Cingulate Gyrus	brain
20	chr4:96561000-96562400	Enhancers	Brain Substantia Nigra	brain
21	chr4:96561200-96561600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr4:96561200-96562400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr4:96561400-96562600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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