Variant report

Variant	rs13141368
Chromosome Location	chr4:144063483-144063484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10000831	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10461277	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461278	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461279	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519679	0.86[EUR][1000 genomes]
rs1108827	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11933189	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935914	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11941742	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11945672	1.00[ASN][1000 genomes]
rs12711407	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105227	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105258	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111543	0.86[EUR][1000 genomes]
rs13113118	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13113907	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13130995	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131510	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13137712	0.81[AMR][1000 genomes]
rs13140326	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141417	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13145081	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13145718	1.00[AFR][1000 genomes]
rs17017424	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2102494	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28452225	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28654139	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28797214	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28891127	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs300932	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300933	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300937	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300942	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs300944	0.81[EUR][1000 genomes]
rs300945	0.81[EUR][1000 genomes]
rs300950	0.81[EUR][1000 genomes]
rs34176541	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34198661	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34225955	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34376112	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34398038	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs34461753	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34474130	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34589296	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34652171	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34770317	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34780033	0.86[EUR][1000 genomes]
rs35021023	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35027946	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs35095943	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35143494	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35305979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35311425	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35416586	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35549285	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35607189	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35887480	0.86[EUR][1000 genomes]
rs35909303	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35971728	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35988039	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4554015	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690751	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4690772	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55693016	0.86[EUR][1000 genomes]
rs55846476	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56085707	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56142323	0.84[EUR][1000 genomes]
rs603861	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603934	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs604746	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537143	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6834491	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6842633	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853356	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857448	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71610408	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71610420	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610422	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610423	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610426	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610427	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610428	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610429	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610430	1.00[AFR][1000 genomes]
rs71610431	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71610432	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs726022	0.86[EUR][1000 genomes]
rs7655033	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661883	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7670050	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7670426	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7674403	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686023	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9637656	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994551	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9997167	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034895	chr4:143945139-144079655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144062000-144068200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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