Variant report

Variant	rs13142673
Chromosome Location	chr4:130042771-130042772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11098995	0.83[AFR][1000 genomes]
rs11098996	0.83[AFR][1000 genomes]
rs11723520	0.83[AFR][1000 genomes]
rs11725174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728895	0.83[AFR][1000 genomes]
rs11728986	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732348	0.80[AMR][1000 genomes]
rs11735242	0.85[AMR][1000 genomes]
rs11736968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11737003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11737495	0.83[AFR][1000 genomes]
rs11946237	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12501507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12505162	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12505609	0.83[AFR][1000 genomes]
rs13115576	0.83[AFR][1000 genomes]
rs13124420	0.83[AFR][1000 genomes]
rs13134769	0.83[AFR][1000 genomes]
rs13144594	0.83[AFR][1000 genomes]
rs13146453	0.83[AFR][1000 genomes]
rs13148505	0.83[AFR][1000 genomes]
rs1446996	0.83[AFR][1000 genomes]
rs17014099	0.83[AFR][1000 genomes]
rs17014259	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17185515	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17351999	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17789626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34359646	0.93[ASN][1000 genomes]
rs34514942	0.83[AFR][1000 genomes]
rs34633860	0.83[AFR][1000 genomes]
rs35693043	0.83[AFR][1000 genomes]
rs35961303	0.83[AFR][1000 genomes]
rs35975200	0.83[AFR][1000 genomes]
rs3754476	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62316964	0.83[AFR][1000 genomes]
rs62317936	0.83[AFR][1000 genomes]
rs62318662	0.83[AFR][1000 genomes]
rs66737416	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130032400-130052200	Weak transcription	Aorta	Aorta
2	chr4:130036000-130044600	Weak transcription	Pancreas	Pancrea

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