Variant report

Variant	rs13145081
Chromosome Location	chr4:144100972-144100973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144095297..144098387-chr4:144099497..144101621,3	K562	blood:
2	chr4:144096235..144099412-chr4:144099530..144102386,3	K562	blood:
3	chr4:144099857..144101984-chr4:144103519..144106015,4	K562	blood:

Variant related genes	Relation type
ENSG00000250326	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10000831	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10461277	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461278	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461279	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519679	0.91[EUR][1000 genomes]
rs1108827	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11933189	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935914	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11941742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11945672	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12711407	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105227	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105258	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111543	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13113118	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13113907	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13130995	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13140326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141368	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141417	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17017424	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17679196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2102494	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28452225	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28654139	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28797214	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28891127	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs300907	0.85[EUR][1000 genomes]
rs300932	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300933	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300937	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300942	0.81[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs300944	0.86[EUR][1000 genomes]
rs300945	0.86[EUR][1000 genomes]
rs300950	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs34176541	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34198661	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34225955	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34376112	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34461753	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34474130	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34589296	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34652171	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34770317	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34780033	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35021023	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35095943	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35143494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35305979	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35311425	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35416586	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35549285	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35607189	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35887480	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35909303	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35971728	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35988039	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4554015	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690751	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4690772	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55693016	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55846476	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56085707	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56142323	0.90[EUR][1000 genomes]
rs603861	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603934	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs604746	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537143	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6834491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6842633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6850423	0.90[AFR][1000 genomes]
rs6853356	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857448	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs686770	0.81[EUR][1000 genomes]
rs71610408	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71610420	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610422	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610423	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610426	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610427	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610428	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610429	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610431	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71610432	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs726022	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7655033	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661883	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7670050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7670426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7674403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9637656	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994551	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9997167	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144096600-144104800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:144096800-144104000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:144097600-144102200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
4	chr4:144097600-144103200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr4:144097800-144104000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:144097800-144104800	Weak transcription	Psoas Muscle	Psoas
7	chr4:144098000-144102000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:144098000-144104400	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:144098200-144103800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:144098400-144103600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:144098400-144104800	Weak transcription	HSMMtube	muscle
12	chr4:144098600-144104600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:144099200-144105400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:144099200-144105400	Weak transcription	Left Ventricle	heart
15	chr4:144099200-144105400	Weak transcription	Small Intestine	intestine
16	chr4:144099800-144104800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:144100200-144105000	Weak transcription	Stomach Mucosa	stomach
18	chr4:144100200-144105000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr4:144100400-144103400	Weak transcription	Primary T cells from cord blood	blood
20	chr4:144100600-144104600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr4:144100600-144104800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr4:144100600-144104800	Weak transcription	Fetal Lung	lung
23	chr4:144100600-144105000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr4:144100600-144105200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr4:144100800-144104000	Weak transcription	Primary B cells from cord blood	blood

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