Variant report

Variant	rs13148174
Chromosome Location	chr4:48119194-48119195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13118073	0.83[ASN][1000 genomes]
rs13123671	0.83[ASN][1000 genomes]
rs13133062	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1466998	0.83[ASN][1000 genomes]
rs35067106	0.83[ASN][1000 genomes]
rs35590286	0.83[ASN][1000 genomes]
rs3792624	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55718430	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60251898	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6825925	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6844940	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7654844	0.83[ASN][1000 genomes]
rs7658300	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48106000-48129400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:48113600-48121800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
3	chr4:48114400-48121600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:48114400-48123000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:48116600-48124000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr4:48116800-48119400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr4:48117200-48119200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr4:48118000-48120800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr4:48118200-48119400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr4:48118200-48119600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr4:48118200-48121600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
12	chr4:48118400-48119200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr4:48118400-48122200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr4:48118400-48129600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr4:48118600-48119200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr4:48118600-48119200	Genic enhancers	Primary T cells fromperipheralblood	blood
17	chr4:48118600-48122000	Genic enhancers	Primary T cells from cord blood	blood
18	chr4:48118600-48128200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:48118800-48127400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr4:48118800-48128800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr4:48118800-48129000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr4:48119000-48120200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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