Variant report

Variant	rs13149527
Chromosome Location	chr4:7576735-7576736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7573157..7575387-chr4:7576113..7578284,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10022225	0.89[EUR][1000 genomes]
rs1015524	0.86[EUR][1000 genomes]
rs10937837	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10937838	0.89[EUR][1000 genomes]
rs10937840	0.87[EUR][1000 genomes]
rs11721619	0.91[EUR][1000 genomes]
rs11728631	0.81[EUR][1000 genomes]
rs11731047	0.82[EUR][1000 genomes]
rs11735301	0.83[EUR][1000 genomes]
rs11942830	0.89[EUR][1000 genomes]
rs11943985	0.85[EUR][1000 genomes]
rs13122192	0.90[EUR][1000 genomes]
rs17465228	0.82[EUR][1000 genomes]
rs34697516	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35171394	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35267475	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4594727	0.88[EUR][1000 genomes]
rs4689781	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4689785	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4689786	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4689787	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4689789	0.84[EUR][1000 genomes]
rs4689791	0.82[EUR][1000 genomes]
rs6852936	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6853188	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv593569	chr4:7291363-7626136	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1011547	chr4:7318232-7637410	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537017	chr4:7318232-7637410	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv461212	chr4:7572718-7620195	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv593617	chr4:7572718-7620195	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7574400-7577000	Enhancers	Fetal Brain Male	brain
2	chr4:7575400-7577000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:7575600-7582600	ZNF genes & repeats	Liver	Liver
4	chr4:7575800-7576800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr4:7575800-7576800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:7576000-7576800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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