Variant report

Variant	rs13150247
Chromosome Location	chr4:100641968-100641969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1027223	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10516455	0.95[ASN][1000 genomes]
rs1115721	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11722443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11727560	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11729858	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[TSI][hapmap];0.96[EUR][1000 genomes]
rs11730739	0.96[ASN][1000 genomes]
rs11936303	0.92[ASN][1000 genomes]
rs12640222	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12642668	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12643245	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12648843	0.96[ASN][1000 genomes]
rs13111133	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13111603	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13112253	0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13118288	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13123629	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13123690	0.96[ASN][1000 genomes]
rs13124255	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13130068	0.92[ASN][1000 genomes]
rs1352775	0.89[CHB][hapmap];0.93[CHD][hapmap];0.89[ASN][1000 genomes]
rs1388295	0.94[ASN][1000 genomes]
rs1426734	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1582793	0.93[ASN][1000 genomes]
rs1586756	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1586757	0.94[ASN][1000 genomes]
rs17029387	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1816197	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1834659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1948353	0.92[ASN][1000 genomes]
rs2866167	0.93[ASN][1000 genomes]
rs35215295	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs36098323	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56411289	0.92[EUR][1000 genomes]
rs61705069	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6831328	0.92[ASN][1000 genomes]
rs6832692	0.92[ASN][1000 genomes]
rs6840719	0.89[ASN][1000 genomes]
rs6846293	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[EUR][1000 genomes]
rs71614607	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs71614614	0.92[EUR][1000 genomes]
rs71614615	0.92[EUR][1000 genomes]
rs7670607	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.99[ASN][1000 genomes]
rs7677594	0.93[ASN][1000 genomes]
rs7678889	0.88[ASN][1000 genomes]
rs7688255	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7691498	0.91[ASN][1000 genomes]
rs958868	1.00[GIH][hapmap]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100636600-100646600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:100637800-100643400	Weak transcription	Left Ventricle	heart
3	chr4:100638000-100643000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:100638200-100643800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:100638400-100642800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:100638600-100642800	Weak transcription	Hela-S3	cervix
7	chr4:100638600-100643400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:100638600-100643400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:100638600-100643400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:100638600-100643400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:100638600-100644200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:100638600-100644200	Weak transcription	Psoas Muscle	Psoas
13	chr4:100638800-100643400	Weak transcription	Fetal Intestine Large	intestine
14	chr4:100640600-100642000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:100640600-100642600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr4:100641000-100642000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:100641200-100643400	Weak transcription	Fetal Heart	heart
18	chr4:100641200-100645400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr4:100641200-100646000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr4:100641600-100643000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr4:100641600-100643000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr4:100641600-100643200	Weak transcription	Ovary	ovary
23	chr4:100641600-100643600	Weak transcription	Adipose Nuclei	Adipose
24	chr4:100641600-100644000	Weak transcription	Colon Smooth Muscle	Colon
25	chr4:100641600-100644000	Weak transcription	HSMMtube	muscle
26	chr4:100641800-100642000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:100641800-100642200	Weak transcription	Fetal Lung	lung
28	chr4:100641800-100642200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr4:100641800-100642800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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