Variant report

Variant	rs13152119
Chromosome Location	chr4:122314528-122314529
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10518389	0.94[ASN][1000 genomes]
rs11733055	0.82[JPT][hapmap]
rs13126125	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1513695	1.00[ASN][1000 genomes]
rs1513699	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17439633	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17439730	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1813400	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2013534	0.92[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs4273489	0.82[JPT][hapmap]
rs507043	0.94[ASN][1000 genomes]
rs532774	0.90[ASN][1000 genomes]
rs6813974	0.92[JPT][hapmap]
rs6839915	0.92[JPT][hapmap]
rs691923	0.94[ASN][1000 genomes]
rs7680368	1.00[ASN][1000 genomes]
rs7680764	1.00[ASN][1000 genomes]
rs882865	0.93[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv879859	chr4:121892490-122438312	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv817261	chr4:122085173-123020068	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv4495	chr4:122310083-122355111	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122313200-122315000	Enhancers	Fetal Heart	heart
2	chr4:122313400-122314800	Enhancers	Left Ventricle	heart
3	chr4:122313600-122319000	Weak transcription	Right Atrium	heart
4	chr4:122313800-122318600	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:122314000-122318600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:122314000-122318800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:122314400-122314600	Enhancers	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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