Variant report

Variant	rs13152964
Chromosome Location	chr5:118084338-118084339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13171299	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13174584	0.83[ASN][1000 genomes]
rs17144476	0.83[ASN][1000 genomes]
rs17144477	0.83[ASN][1000 genomes]
rs17144517	1.00[EUR][1000 genomes]
rs17144520	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17144523	1.00[EUR][1000 genomes]
rs17144526	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17144551	0.92[ASN][1000 genomes]
rs2193965	0.83[ASN][1000 genomes]
rs34694285	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35740684	0.83[ASN][1000 genomes]
rs58999502	0.92[ASN][1000 genomes]
rs6871501	0.83[ASN][1000 genomes]
rs73249197	0.92[ASN][1000 genomes]
rs7727675	0.83[ASN][1000 genomes]
rs888711	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032241	chr5:117900051-118157400	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1034487	chr5:118047803-118085925	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118083400-118085400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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