Variant report

Variant	rs13153356
Chromosome Location	chr5:76158716-76158717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10035244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12697859	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12697860	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13187905	0.97[ASN][1000 genomes]
rs2434648	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2460501	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2460505	0.97[ASN][1000 genomes]
rs2460506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3393424	chr5:76122720-76287744	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv34133	chr5:76138696-76239330	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76153000-76174400	Weak transcription	Primary T cells from cord blood	blood
2	chr5:76154800-76162800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:76156000-76158800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr5:76156600-76158800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:76156600-76159200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:76156800-76162200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:76157200-76162800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:76157400-76159000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr5:76157400-76159200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr5:76158400-76158800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:76158400-76159200	Enhancers	Fetal Intestine Large	intestine
12	chr5:76158400-76165200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:76158600-76159000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:76158600-76159200	Enhancers	Fetal Intestine Small	intestine
15	chr5:76158600-76159200	Enhancers	Stomach Mucosa	stomach
16	chr5:76158600-76163000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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