Variant report

Variant	rs13157657
Chromosome Location	chr5:60758847-60758848
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:60752201..60754945-chr5:60755647..60758882,3	K562	blood:
2	chr5:60755091..60757067-chr5:60758123..60759831,2	K562	blood:
3	chr5:60749146..60750936-chr5:60757361..60759917,2	MCF-7	breast:

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10041978	0.94[ASN][1000 genomes]
rs1045352	0.95[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10939900	0.82[ASN][1000 genomes]
rs10939901	0.82[ASN][1000 genomes]
rs10939902	0.81[ASN][1000 genomes]
rs10939903	0.94[ASN][1000 genomes]
rs10939905	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11742658	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11743711	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11747564	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11749200	0.95[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11750589	0.81[ASN][1000 genomes]
rs11950318	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11952146	0.95[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11954430	1.00[ASN][1000 genomes]
rs12187112	0.93[AMR][1000 genomes]
rs12188685	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12188710	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12189001	0.82[ASN][1000 genomes]
rs12518479	0.82[ASN][1000 genomes]
rs12520628	0.82[ASN][1000 genomes]
rs12522647	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13156100	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13157831	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13158413	0.94[ASN][1000 genomes]
rs13158675	0.82[ASN][1000 genomes]
rs13159018	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13159166	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13160801	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13162358	0.82[ASN][1000 genomes]
rs13162694	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13163970	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13166934	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13169711	0.82[ASN][1000 genomes]
rs13170262	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171497	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13171757	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13172080	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13172084	0.95[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13178686	0.82[ASN][1000 genomes]
rs13179091	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13179617	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13181015	0.81[ASN][1000 genomes]
rs13185068	0.98[ASN][1000 genomes]
rs13185783	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13186194	0.95[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13188685	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1348716	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1363892	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1374043	1.00[ASN][1000 genomes]
rs1445976	0.98[ASN][1000 genomes]
rs1445979	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1445980	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1445981	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1477355	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17424296	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1986252	1.00[ASN][1000 genomes]
rs2034239	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2053693	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2053694	0.98[ASN][1000 genomes]
rs2276987	0.95[CEU][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28610339	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34739794	0.80[ASN][1000 genomes]
rs35262187	0.82[ASN][1000 genomes]
rs4392578	0.82[ASN][1000 genomes]
rs4484384	0.82[ASN][1000 genomes]
rs4604142	0.82[ASN][1000 genomes]
rs55838118	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56035042	0.82[ASN][1000 genomes]
rs60529601	0.82[ASN][1000 genomes]
rs60886975	0.82[ASN][1000 genomes]
rs62368660	0.82[ASN][1000 genomes]
rs6449528	0.82[ASN][1000 genomes]
rs6449529	0.82[ASN][1000 genomes]
rs6449530	0.81[ASN][1000 genomes]
rs6449531	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6449532	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6449533	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6449535	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66775554	0.98[ASN][1000 genomes]
rs6860608	0.81[ASN][1000 genomes]
rs6865624	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6873712	0.95[CEU][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6874264	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6874266	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6877610	0.82[ASN][1000 genomes]
rs6878927	0.95[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6879809	0.98[ASN][1000 genomes]
rs6881765	0.82[ASN][1000 genomes]
rs6881799	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6882136	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6885005	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6890351	0.95[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6894675	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6895046	1.00[ASN][1000 genomes]
rs6898746	0.97[ASN][1000 genomes]
rs7443602	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7700289	0.82[ASN][1000 genomes]
rs7709645	0.81[ASN][1000 genomes]
rs7714457	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7714712	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7717082	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719647	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722810	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7727824	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7732234	0.95[ASN][1000 genomes]
rs7734879	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753894	chr5:60731458-60777345	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv522826	chr5:60754419-60759524	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60744400-60767800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr5:60746000-60759600	Weak transcription	Aorta	Aorta
3	chr5:60746200-60759800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr5:60747000-60760600	Weak transcription	NHLF	lung
5	chr5:60747000-60762800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:60747200-60760200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:60747600-60760400	Weak transcription	NH-A	brain
8	chr5:60747600-60770600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:60749000-60762200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:60750000-60760400	Weak transcription	Primary T cells from cord blood	blood
11	chr5:60751600-60760400	Weak transcription	Right Atrium	heart
12	chr5:60752600-60759400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:60752600-60760200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr5:60753000-60760200	Weak transcription	Adipose Nuclei	Adipose
15	chr5:60753200-60760200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:60755000-60762600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:60755600-60762600	Enhancers	Brain Substantia Nigra	brain
18	chr5:60756000-60759400	Weak transcription	Fetal Lung	lung
19	chr5:60756400-60759000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:60756400-60760400	Weak transcription	Brain Angular Gyrus	brain
21	chr5:60756800-60761000	Enhancers	Brain Anterior Caudate	brain
22	chr5:60757000-60761600	Enhancers	Brain Hippocampus Middle	brain
23	chr5:60757200-60759400	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr5:60757400-60759800	Weak transcription	Left Ventricle	heart
25	chr5:60757400-60760000	Enhancers	Colon Smooth Muscle	Colon
26	chr5:60757400-60760200	Weak transcription	Colonic Mucosa	Colon
27	chr5:60757400-60760200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr5:60757400-60760400	Weak transcription	Gastric	stomach
29	chr5:60757600-60759400	Weak transcription	Fetal Stomach	stomach
30	chr5:60757600-60759600	Weak transcription	Pancreas	Pancrea
31	chr5:60757600-60759600	Weak transcription	Psoas Muscle	Psoas
32	chr5:60757600-60759600	Weak transcription	Small Intestine	intestine
33	chr5:60757600-60759800	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr5:60757600-60760200	Weak transcription	Esophagus	oesophagus
35	chr5:60757600-60771000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr5:60757800-60759400	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr5:60757800-60760200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr5:60757800-60760200	Weak transcription	HSMM	muscle
39	chr5:60757800-60760600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr5:60757800-60760800	Enhancers	HSMMtube	muscle
41	chr5:60758000-60759600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr5:60758000-60760200	Weak transcription	Liver	Liver
43	chr5:60758000-60760200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr5:60758000-60760400	Weak transcription	Fetal Kidney	kidney
45	chr5:60758000-60764000	Weak transcription	Fetal Intestine Small	intestine
46	chr5:60758000-60772800	Weak transcription	Fetal Intestine Large	intestine
47	chr5:60758200-60759400	Weak transcription	Stomach Mucosa	stomach
48	chr5:60758200-60759400	Weak transcription	A549	lung
49	chr5:60758200-60760400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr5:60758200-60761000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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