The 2.0 version of rSNPBase

Variant report

Variant rs13158675
Chromosome Location chr5:60688532-60688533
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:60659000-60703800 Weak transcription Primary B cells from cord blood blood
2 chr5:60659400-60703600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
3 chr5:60659600-60697600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr5:60663400-60690000 Weak transcription Psoas Muscle Psoas
5 chr5:60667800-60689800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr5:60667800-60689800 Weak transcription NHEK skin
7 chr5:60675400-60692800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr5:60675800-60692800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr5:60677400-60689400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr5:60681200-60704000 Weak transcription Brain Germinal Matrix brain
11 chr5:60682000-60690000 Weak transcription Adipose Nuclei Adipose
12 chr5:60682000-60709800 Weak transcription Left Ventricle heart
13 chr5:60682200-60690000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr5:60682200-60695600 Weak transcription HUES64 Cell Line embryonic stem cell
15 chr5:60682400-60695800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr5:60682400-60697800 Weak transcription Fetal Kidney kidney
17 chr5:60682400-60698800 Weak transcription Small Intestine intestine
18 chr5:60682600-60690000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr5:60682600-60690000 Weak transcription Right Ventricle heart
20 chr5:60682600-60695800 Weak transcription Breast Myoepithelial Primary Cells Breast
21 chr5:60682600-60703600 Weak transcription Rectal Smooth Muscle rectum
22 chr5:60682600-60704200 Weak transcription Rectal Mucosa Donor 31 rectum
23 chr5:60682600-60712400 Weak transcription Esophagus oesophagus
24 chr5:60682800-60690000 Weak transcription Muscle Satellite Cultured Cells --
25 chr5:60682800-60693200 Weak transcription Fetal Muscle Leg muscle
26 chr5:60683000-60696800 Weak transcription HSMMtube muscle
27 chr5:60683200-60690400 Weak transcription Duodenum Mucosa Duodenum
28 chr5:60684600-60696800 Weak transcription Primary T helper cells PMA-I stimulated --
29 chr5:60684800-60689800 Weak transcription Osteobl bone
30 chr5:60684800-60690000 Weak transcription Brain Anterior Caudate brain
31 chr5:60685000-60689600 Weak transcription Stomach Mucosa stomach
32 chr5:60685000-60690000 Weak transcription Brain Hippocampus Middle brain
33 chr5:60685000-60693000 Weak transcription NH-A brain
34 chr5:60685000-60696400 Weak transcription Colon Smooth Muscle Colon
35 chr5:60685400-60689800 Weak transcription Primary T regulatory cells fromperipheralblood blood
36 chr5:60685400-60704000 Weak transcription Primary B cells from peripheral blood blood
37 chr5:60685600-60690000 Weak transcription Placenta Amnion Placenta Amnion
38 chr5:60685800-60690000 Weak transcription Brain Substantia Nigra brain
39 chr5:60685800-60690000 Weak transcription Hela-S3 cervix
40 chr5:60685800-60690600 Weak transcription Liver Liver
41 chr5:60685800-60695400 Weak transcription Fetal Brain Male brain
42 chr5:60686000-60690000 Weak transcription Brain Cingulate Gyrus brain
43 chr5:60686000-60690000 Weak transcription Brain Inferior Temporal Lobe brain
44 chr5:60686000-60690000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
45 chr5:60686200-60688600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr5:60686200-60688800 Weak transcription Primary T cells fromperipheralblood blood
47 chr5:60686400-60697600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr5:60687400-60690000 Weak transcription Lung lung
49 chr5:60687400-60703600 Weak transcription Rectal Mucosa Donor 29 rectum
50 chr5:60687400-60705800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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Last update: Aug 31, 2015