Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11948380	0.89[ASN][1000 genomes]
rs11953269	0.89[ASN][1000 genomes]
rs16899990	0.89[ASN][1000 genomes]
rs16900007	0.89[ASN][1000 genomes]
rs28870420	0.89[ASN][1000 genomes]
rs4282330	0.89[ASN][1000 genomes]
rs4295402	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4337863	0.89[ASN][1000 genomes]
rs4343853	0.89[ASN][1000 genomes]
rs4386744	0.89[ASN][1000 genomes]
rs4605801	0.80[ASN][1000 genomes]
rs4867031	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4867257	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4867259	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57503003	0.89[ASN][1000 genomes]
rs59615654	0.89[ASN][1000 genomes]
rs60373268	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6860184	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6872827	0.89[ASN][1000 genomes]
rs73084983	0.89[ASN][1000 genomes]
rs7733219	0.89[ASN][1000 genomes]
rs7733353	0.86[ASN][1000 genomes]
rs7735950	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881635	chr5:30122190-30371238	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv915858	chr5:30176470-31018294	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv881357	chr5:30226419-30371238	Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:30239200-30239800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr5:30239200-30240000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:30239200-30240000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:30239200-30240200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr5:30239400-30239800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr5:30239400-30240200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr5:30239400-30240200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:30239600-30240200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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