Variant report

Variant	rs13159596
Chromosome Location	chr5:80799203-80799204
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:80797821..80800021-chr5:80804544..80806893,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13165194	0.91[ASN][1000 genomes]
rs13177962	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34672841	0.83[ASN][1000 genomes]
rs35663154	0.82[ASN][1000 genomes]
rs35810595	0.91[ASN][1000 genomes]
rs35883849	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35995231	0.91[ASN][1000 genomes]
rs3764986	0.85[ASN][1000 genomes]
rs3792923	0.91[ASN][1000 genomes]
rs62366209	0.91[ASN][1000 genomes]
rs62366246	0.91[ASN][1000 genomes]
rs6452409	0.91[ASN][1000 genomes]
rs66563423	0.91[ASN][1000 genomes]
rs6865796	0.91[ASN][1000 genomes]
rs6866727	0.87[ASN][1000 genomes]
rs6894847	0.91[ASN][1000 genomes]
rs6895015	0.91[ASN][1000 genomes]
rs6896009	0.91[ASN][1000 genomes]
rs7702374	0.91[ASN][1000 genomes]
rs7725131	0.85[ASN][1000 genomes]
rs7725277	0.91[ASN][1000 genomes]
rs7737895	0.85[ASN][1000 genomes]
rs9918175	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1028498	chr5:80712364-80860430	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80766200-80800000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr5:80770000-80800200	Weak transcription	Brain Anterior Caudate	brain
3	chr5:80770000-80801600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr5:80770000-80801600	Weak transcription	NHLF	lung
5	chr5:80770000-80803000	Weak transcription	Fetal Kidney	kidney
6	chr5:80770000-80811000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr5:80770000-80812000	Weak transcription	Left Ventricle	heart
8	chr5:80770200-80811000	Weak transcription	Colon Smooth Muscle	Colon
9	chr5:80770400-80801600	Weak transcription	Ovary	ovary
10	chr5:80770400-80808200	Weak transcription	Fetal Stomach	stomach
11	chr5:80771200-80799600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr5:80778800-80800400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:80779000-80809600	Weak transcription	Primary T cells from cord blood	blood
14	chr5:80779000-80830200	Weak transcription	Primary B cells from cord blood	blood
15	chr5:80779000-80834400	Weak transcription	Fetal Muscle Leg	muscle
16	chr5:80779200-80801800	Weak transcription	Fetal Heart	heart
17	chr5:80782800-80801000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr5:80783000-80801400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:80788400-80801600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr5:80788800-80799600	Weak transcription	Fetal Brain Male	brain
21	chr5:80791400-80801400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:80793200-80801600	Weak transcription	Brain Hippocampus Middle	brain
23	chr5:80795400-80801800	Weak transcription	Fetal Lung	lung
24	chr5:80797000-80834000	Weak transcription	Primary B cells from peripheral blood	blood
25	chr5:80797400-80801600	Weak transcription	Adipose Nuclei	Adipose
26	chr5:80797600-80800600	Strong transcription	Fetal Thymus	thymus
27	chr5:80797800-80799400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr5:80797800-80799600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:80797800-80802000	Strong transcription	Dnd41	blood
30	chr5:80798200-80818000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr5:80798400-80801400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr5:80798400-80801600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr5:80798400-80802400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:80798400-80820000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr5:80798400-80821400	Weak transcription	Thymus	Thymus
36	chr5:80798600-80826600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr5:80799000-80800200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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