Variant report

Variant	rs1316032
Chromosome Location	chr14:67938276-67938277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:67937786..67940325-chr14:67940798..67942852,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1315730	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1315733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1315736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1316130	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1316169	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv456331	chr14:67732861-68103780	Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv564961	chr14:67732861-68103780	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv470651	chr14:67732861-68113293	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv902066	chr14:67873128-68103780	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv1048046	chr14:67932876-67958467	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv902067	chr14:67935206-67953848	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1035855	chr14:67935684-67964355	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67928800-67946600	Weak transcription	Pancreas	Pancrea
2	chr14:67929600-67942600	Weak transcription	Lung	lung
3	chr14:67929800-67938600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr14:67931200-67939600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr14:67931400-67939000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr14:67931800-67938600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr14:67932000-67939600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr14:67932800-67939200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:67932800-67940000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:67933000-67954400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr14:67933200-67939400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:67934400-67939400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr14:67934600-67938800	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr14:67934600-67939000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr14:67934600-67950600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr14:67934800-67939200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr14:67934800-67946800	Weak transcription	Placenta	Placenta
18	chr14:67935000-67977200	Weak transcription	Brain Angular Gyrus	brain
19	chr14:67935200-67938400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr14:67935200-67946800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr14:67935200-67952200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr14:67935400-67938600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr14:67935400-67940200	Weak transcription	Fetal Intestine Large	intestine
24	chr14:67935400-67945200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr14:67936000-67939600	Weak transcription	Fetal Thymus	thymus
26	chr14:67936000-67952000	Weak transcription	Brain Substantia Nigra	brain
27	chr14:67936800-67938600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr14:67937000-67939800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr14:67937400-67938600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr14:67937400-67939000	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr14:67937400-67944800	Weak transcription	Primary hematopoietic stem cells	blood
32	chr14:67937400-67945000	Weak transcription	Colonic Mucosa	Colon
33	chr14:67937400-67945200	Strong transcription	Fetal Intestine Small	intestine
34	chr14:67937400-67951600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr14:67937400-67954800	Weak transcription	Gastric	stomach
36	chr14:67937400-67955000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr14:67937600-67940600	Strong transcription	Spleen	Spleen
38	chr14:67937600-67952000	Strong transcription	Primary T cells from cord blood	blood
39	chr14:67937600-67955000	Weak transcription	Brain Anterior Caudate	brain
40	chr14:67937800-67939400	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr14:67938000-67945600	Weak transcription	Adipose Nuclei	Adipose
42	chr14:67938200-67939600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr14:67938200-67940800	Strong transcription	Thymus	Thymus
44	chr14:67938200-67953400	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links